PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma20g00330.1
Common NameZOSMA_20G00330
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 203aa    MW: 22837.8 Da    PI: 8.7578
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma20g00330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.11e-29108166159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYG+K+vkgs +pr+YY+C++++C+vkk+v+r+ e+ ++v+++Yeg+Hnh+
  Zosma20g00330.1 108 LDDGYRWRKYGKKSVKGSLNPRNYYKCSTERCTVKKRVQRDPENDEYVITMYEGKHNHS 166
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-3093166IPR003657WRKY domain
SuperFamilySSF1182905.36E-26100167IPR003657WRKY domain
PROSITE profilePS5081127.692103168IPR003657WRKY domain
SMARTSM007742.5E-31108167IPR003657WRKY domain
PfamPF031062.3E-23109165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MAAVFDIPTD ASATTYPYII QQYQQPFHAD DLHVHSTCSF ELLDQEMINP VPLQVSDHDQ  60
VFFSEPCCPP AAISVEKTSV LPTRCKRAKT RSRRNTIGFR TRSKVDVLDD GYRWRKYGKK  120
SVKGSLNPRN YYKCSTERCT VKKRVQRDPE NDEYVITMYE GKHNHSLTAA GAISFHASLL  180
PFAASNIPVY PIASSTATNY HG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2498169778Probable WRKY transcription factor 4
2lex_A3e-2498169778Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192531.15e-34probable WRKY transcription factor 51
TrEMBLA0A0K9PMV21e-151A0A0K9PMV2_ZOSMR; Putative WRKY transcription factor 51
STRINGOGLUM05G05440.18e-34(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.15e-36WRKY DNA-binding protein 51