PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma17g00040.1
Common NameZOSMA_17G00040
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 407aa    MW: 46218.4 Da    PI: 8.2907
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma17g00040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.74.4e-14134226390
             FAR1   3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      Y ++ + +GFsvr  ++k+     + ++  +++++ Csk+g+++     t+ +rr++ ++r+gC a++k k+ + +++w+ ++++ +HnH+++
  Zosma17g00040.1 134 YYDFTSVTGFSVRLGSTKNVvdnkSGQKILVMKRLLCSKQGSPSLILPPTNGNRRKNGVSRCGCLASIKFKRLDkSDNWVTDTVNFDHNHSFT 226
                      889999********9988876653444556899************999999********************99989**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-11134226IPR004330FAR1 DNA binding domain
PfamPF105513.1E-6348383IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MNYGTGKTPN SLNFQFNSSH RQTNVVNPTV CSDNVSTPLD PDVVCSIFFD SEFVQSTSAD  60
IMQSFAEIRS SFANLGCGTA KTPDNYCKRK FSSPVHDHAS PDHQNASSSH NQCNKSCPVV  120
GQVFSSYELF VQSYYDFTSV TGFSVRLGST KNVVDNKSGQ KILVMKRLLC SKQGSPSLIL  180
PPTNGNRRKN GVSRCGCLAS IKFKRLDKSD NWVTDTVNFD HNHSFTTPSK IRYLPINRSI  240
SHTSKLLFSS LAEVNVPVSQ QAAYFSNQLG GVQNMGCMKM DINNMVRDDR IDFKNYDVDL  300
IIEEFEMKKL ENKDFFYDLV KDDEGRLKHL FWADPTMIEN YKLFEDSVTF DTTYKTNVYS  360
MVFGMFCGVN HHRKITIFCS AFLRYFFFTF LLKLALSFIL YHLFLH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PR580.0A0A0K9PR58_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-32FAR1-related sequence 5