PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma173g00150.1 | ||||||||
Common Name | ZOSMA_173G00150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 364aa MW: 41497.8 Da PI: 6.6144 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.7 | 4.8e-21 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rqvtfskRr+gi KKA ELS+LCd++ a+++fs+ gk Zosma173g00150.1 9 KRLENTGGRQVTFSKRRAGIVKKATELSILCDIDLALLMFSPAGK 53 6889**************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.572 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-28 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.62E-24 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-19 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MGRVKLKIKR LENTGGRQVT FSKRRAGIVK KATELSILCD IDLALLMFSP AGKATLCLGE 60 NSTIDQVLLK FSQQTPQERA KRKLESLEIY QNMMKVLKKT FKKLDHDVNI QDFVGSSTNS 120 IEDMGNHMRM LQGQLLELQN RLSFWVEPES VDKLDHITGI EDYLRHALND LDVQKEMCDR 180 INFANMEGSS SNQFQGGMQS IHMAAQPSMP WIQNNAQHTM LNAQHTMQLP NVTNHNIPLA 240 AQNDTHVPRP VQNNTPLDHK YNIDPANFSD FFGMNNQDHQ LDASRQAEIT VMNLNEMGHH 300 QRSMNMQQQL GGGQHSYQPS LSFNINTQQV EKNIKNDPDL NYDHLGEDQL GYNVRQIDPH 360 YDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-13 | 1 | 88 | 1 | 86 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-13 | 1 | 88 | 1 | 86 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-13 | 1 | 88 | 1 | 86 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-13 | 1 | 88 | 1 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-13 | 1 | 88 | 1 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-13 | 1 | 88 | 1 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-13 | 1 | 88 | 1 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-13 | 1 | 88 | 1 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-13 | 1 | 88 | 1 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-13 | 1 | 88 | 1 | 86 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010258316.1 | 7e-80 | PREDICTED: agamous-like MADS-box protein AGL65 isoform X3 | ||||
TrEMBL | A0A0K9PUF1 | 0.0 | A0A0K9PUF1_ZOSMR; Putative agamous-like MADS-box protein AGL30-related ZmMADS1, MIKC* S-clade sub-family |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4626 | 36 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 3e-68 | AGAMOUS-like 30 |
Link Out ? help Back to Top | |
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Phytozome | Zosma173g00150.1 |