PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma16g01620.1 | ||||||||
Common Name | ZOSMA_16G01620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 266aa MW: 30020.2 Da PI: 9.733 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.7 | 3.1e-06 | 148 | 188 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+RR+ri ++ +eL +l+P K+s ae+ + A +Y+k Lq Zosma16g01620.1 148 RQRRKRISNKTQELGKLVPGgH------KMSTAEMFQAAGKYVKFLQ 188 9******************955......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.233 | 138 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.02E-11 | 141 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-9 | 143 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-6 | 144 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.09E-7 | 146 | 191 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MMEEMSHHRK LHLHHRRLHH QQKPEEFGLR PTVNIGDSLF HDITINSVGN CELRELESVL 60 LPALLPNEHL IMSRSISPQP MVRSDPLDAA MSYRQQPTVL KRSRGDLIRN DPHVLGYRRP 120 SDNAFSVVSV GENEHEQTQL SPQSFAARQR RKRISNKTQE LGKLVPGGHK MSTAEMFQAA 180 GKYVKFLQAQ VGILSMISPP VEGSGRGGEK QLQQQLLSTT AIQEKLYQIE RCIVPNRTVE 240 GLANDPFVKS HPFISRDLER FTADS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9SA82 | 2e-24 | BH052_ARATH; Transcription factor bHLH52 | ||||
TrEMBL | A0A0K9PVE7 | 0.0 | A0A0K9PVE7_ZOSMR; Uncharacterized protein | ||||
STRING | XP_008806162.1 | 3e-39 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6201 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 1e-26 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma16g01620.1 |
Publications ? help Back to Top | |||
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