PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma16g00030.1 | ||||||||
Common Name | ZOSMA_16G00030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | WRKY | ||||||||
Protein Properties | Length: 145aa MW: 16276.3 Da PI: 9.0976 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 107 | 9.6e-34 | 10 | 67 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts+ C vkk+vers++dp vv++tYeg+H+h Zosma16g00030.1 10 EDGYRWRKYGQKAVKNSPYPRSYYRCTSSMCGVKKRVERSSSDPAVVVTTYEGQHTHA 67 8********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.9E-33 | 2 | 69 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.45E-29 | 3 | 69 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.8 | 4 | 69 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-39 | 9 | 68 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.7E-27 | 10 | 66 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MTKSEIDHLE DGYRWRKYGQ KAVKNSPYPR SYYRCTSSMC GVKKRVERSS SDPAVVVTTY 60 EGQHTHASPI APRGELISPH INYSTFAASM QATQFHVPCR KFSIPSYQPS ISPPPQQMQV 120 DEISHGLVRD HGLLQDLVPS DVRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-30 | 2 | 69 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-30 | 2 | 69 | 10 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010259241.1 | 8e-51 | PREDICTED: probable WRKY transcription factor 48 | ||||
Swissprot | Q9FGZ4 | 1e-43 | WRK48_ARATH; Probable WRKY transcription factor 48 | ||||
TrEMBL | A0A0K9PSU7 | 1e-104 | A0A0K9PSU7_ZOSMR; Putative WRKY transcription factor 43 | ||||
STRING | XP_010259241.1 | 3e-50 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 5e-45 | WRKY DNA-binding protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Zosma16g00030.1 |
Publications ? help Back to Top | |||
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