PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma15g00570.1
Common NameZOSMA_15G00570
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 397aa    MW: 44722.3 Da    PI: 7.0722
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma15g00570.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.81.5e-06253297655
                      HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      + + r+RR++i ++ + L +l+P         +++  e+L  A +YIk Lq
  Zosma15g00570.1 253 SVAARQRRRKISNKTQDLEKLIPGgH------RMNTGEMLLSAEKYIKFLQ 297
                      6678*******************955......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.077247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-10247310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-6250300No hitNo description
Gene3DG3DSA:4.10.280.103.8E-10250308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-6253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MVGTNQYLPF MFSSSTTRDV RNTIINIPTK IQEPSPSIYS NDDSTFEFLR EFFSEDSLNQ  60
LQINKTAPPL PENKDPAITL SEKPPIPNPI CRQMSEPEYY DDGDLNRLHF PFLPVGIAST  120
IDGLYRPAVN GASNNPDEPV YGSYLTEIDD YHARNGETTN VVIDKPAEPF FSVVQPELQQ  180
FHVGSSLNTN GPSMTAQSVA ARQRPYHARN GETTNAVIDK PAEPFFSVVQ PELQQFHVGS  240
SLNTNGPSMT AQSVAARQRR RKISNKTQDL EKLIPGGHRM NTGEMLLSAE KYIKFLQAQV  300
GMLSLMKQQQ HDRDHNYHNR NPTECRRTMG EDGRIQRLVM STDVQEKLYR AKKCIVSKEI  360
VDILGKDPSI FFQSSISRDF STFIKTLKSP QRLNHP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PUV80.0A0A0K9PUV8_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.17e-22bHLH family protein