PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma151g00270.1
Common NameZOSMA_151G00270
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 374aa    MW: 42477.7 Da    PI: 10.0076
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma151g00270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR148.13.8e-15389690
              FAR1  6 YAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                      YA ++GF+vr+ ++k +  ++e++ r++ Csk+g+ ++++ +   +ek++r+  +++  C a++ +++++  + w+  ++ ++HnH+l+
  Zosma151g00270.1  3 YAGNIGFNVRMGSTKIN--DQEMVGRRMLCSKQGYVSSTTMAnivNEKKQRRIRNSHSCCLAMIYISLDRsIKLWRAVNFIQDHNHPLV 89
                      ************98887..9999*************99999889877777788888999*********99899**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.7E-13289IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.347188224IPR007527Zinc finger, SWIM-type
SMARTSM005753.0E-4199226IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGYAGNIGFN VRMGSTKIND QEMVGRRMLC SKQGYVSSTT MANIVNEKKQ RRIRNSHSCC  60
LAMIYISLDR SIKLWRAVNF IQDHNHPLVT PSKKRYLLVN RVITPLSRAL FQSLNISDIS  120
PSDQYCVAAQ EAGGFDHIQF TPSDLSNMRR DDRCNIIQRN ADLLIELFEE RKNKSPDFFF  180
SFTRHEDGTI HVGEEGVYAK CTCRLFESLG ISCRHLICYL TLNNVSILPE TLVCNRWRAL  240
QRKRPTTTSH TTEVKDKGNL RPLFNHLISL AGENKDRIIY ARKLLEDDIQ TITDNNTASD  300
IPKMYGSITR FHDSNTQSIA IGNPAVTRTK GCRHGGHPPK KSKRFISKRE NNIPKQRSCS  360
ICGIKGHDKR SCP*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PYA60.0A0A0K9PYA6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-15FAR1-related sequence 5