PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma145g00090.1 | ||||||||
Common Name | ZOSMA_145G00090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | FAR1 | ||||||||
Protein Properties | Length: 396aa MW: 44457.9 Da PI: 7.4705 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 47.7 | 5.3e-15 | 122 | 214 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y ++A+++GFsvr +++ + ++ +++++ Csk+g+++ t+ + r++ ++r+gC a++k k+ + ++kw ++++l+HnH+++ Zosma145g00090.1 122 YYDFASSTGFSVRLGLTHNIldkeTGQKILVMKRLLCSKQGSPNLILPPTNGTGRKNGVSRCGCLASIKFKRIDrSDKWITDSVNLDHNHQFT 214 999**********9877665553344556789************999999999********************99***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-11 | 122 | 214 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.6E-13 | 336 | 392 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MNYQFNSLHC QTTVNPINSS VNVSRSLNTD NVQCNFFDSE NVQSASADIG ESSVQIPANS 60 DNVSYGTAKT PDNHLKRKFS STGGYPTSPN LENGSSGYSQ SSKPCPIAGE VFPSYEMAVQ 120 SYYDFASSTG FSVRLGLTHN ILDKETGQKI LVMKRLLCSK QGSPNLILPP TNGTGRKNGV 180 SRCGCLASIK FKRIDRSDKW ITDSVNLDHN HQFTTSSKIR YLPINRSISH TFKILFSSLA 240 DVNVPVSQQA AYFSNQLGGP ENMGCMTLDM NNMVRDDRID LKNYDVDLIV EDFKMKKLEN 300 AQFFYDLVKD DEGRLKHLFW DDPTMIENYK LFGDSVTFDR TYKTNVYSMV FGMFCGVNHQ 360 RKTTIFGSAF LSNENVDFFT WLFNTFKQCM GHPPQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PXI5 | 0.0 | A0A0K9PXI5_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1424 | 4 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 9e-39 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Zosma145g00090.1 |