PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma128g00200.1

Common Name

ZOSMA_128G00200

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Dof

Protein Properties

Length: 314aa MW: 33875.6 Da PI: 9.647

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma128g00200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	63	123	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCyynnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+nk+ + Zosma128g00200.1 63 PETALKCPRCESTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRIK 123 67899*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	47	116	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-33	66	121	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.739	67	121	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	69	105	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MIYESVPAYL DPSNWNQQQK HQQAGGSSTG GGTSDVPART EGGSAVRRGS IVDRARQARV 60 PQPETALKCP RCESTNTKFC YYNNYSLSQP RHFCKACRRY WTRGGALRNV PVGGGCRRNK 120 RIKRSSSKSS VSMINQSSTA VTSGFGGAAT SNVMDTTQFP FMTSLHPLSE YGLTNIGMNY 180 GGIQTSTTID PVILEQWKIN QQLQQFPFGG DQNQTPTPAG LMYPFDTETT TTMPFGDQPL 240 GKSAASRLIS QIASVKREEN RHAAGLNLSR LQYLGNNSHS YWGSNNVGGG GDGSTGCWTD 300 LSGFNSSSPG NLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010920614.1	1e-84	dof zinc finger protein DOF5.1
TrEMBL	A0A0K9PZW2	0.0	A0A0K9PZW2_ZOSMR; Dof zinc finger protein
STRING	Aquca_003_00022.1	3e-83	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	3e-47	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Zosma128g00200.1