PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma120g00600.1
Common NameZOSMA_120G00600
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NF-YB
Protein Properties Length: 162aa    MW: 17853.9 Da    PI: 4.6493
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma120g00600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB43.38.7e-14461212297
             NF-YB  22 PanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                       P +  i k++     e +  fi ++++ a+d c++ kr+tin++d+l +l ++ f ++v+pl++ l+ +r+ +++k
  Zosma120g00600.1  46 PDEININKESLMAFSESARIFIHYLSATANDICKESKRQTINAEDVLSSLEEIEFPEFVAPLRAALEDFRKKNKAK 121
                       6777899999999*********************************************************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.3E-3216153IPR009072Histone-fold
SuperFamilySSF471137.68E-2417147IPR009072Histone-fold
PfamPF008087.7E-94694IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MANKETGGEP TAALVDLPKS IVRRVVKERI ANLAASSKTG GAGGEPDEIN INKESLMAFS  60
ESARIFIHYL SATANDICKE SKRQTINAED VLSSLEEIEF PEFVAPLRAA LEDFRKKNKA  120
KKSASKGIEI SRKREVEEKK ETHDEDEFET EDIEVDDDGN K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A6e-1111221108DNA polymerase epsilon subunit D
5y27_A6e-1111221108DNA polymerase epsilon subunit D
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083618.14e-51DNA polymerase epsilon subunit 3
TrEMBLA0A0K9Q3721e-111A0A0K9Q372_ZOSMR; DNA polymerase epsilon subunit 3
STRINGGSMUA_Achr8P07750_0013e-49(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-33nuclear factor Y, subunit B11