PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma103g00490.1
Common NameZOSMA_103G00490
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WOX
Protein Properties Length: 200aa    MW: 22978.2 Da    PI: 9.6144
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma103g00490.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.4e-19127187257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       r+R+++t+ ql++Le +F++ n +p++ +++e++  l    +++e++V++WFqNrRa+ k+
  Zosma103g00490.1 127 RQRWNPTTMQLQILEGMFKQgNGTPNKVKIKEITFGLlqhgEISETNVYNWFQNRRARFKR 187
                       89*****************99**************************************97 PP
2Wus_type_Homeobox91.76.9e-30126188264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        ar+RW+Pt+ Q++iLe ++k+G  tPnk +i++it  L ++G+i+++NV++WFQNr+aR ++k
   Zosma103g00490.1 126 ARQRWNPTTMQLQILEGMFKQGNGTPNKVKIKEITFGLLQHGEISETNVYNWFQNRRARFKRK 188
                        789*********************************************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.345123188IPR001356Homeobox domain
SMARTSM003892.2E-7125192IPR001356Homeobox domain
SuperFamilySSF466895.13E-16126194IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-13126192IPR009057Homeodomain-like
CDDcd000866.86E-5127182No hitNo description
PfamPF000464.8E-17127187IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MKVWNEIDDG DRSKRMRMEK VMEDMMTMGF GGDGVAVKVM TDEQIEILRE QISVYATICE  60
KLVEMHNSMT ATATRQSTSL SSALPGMRMC GSIYNDPTTM TSSWYGYDDG RSQIQQQQYR  120
QNMVTARQRW NPTTMQLQIL EGMFKQGNGT PNKVKIKEIT FGLLQHGEIS ETNVYNWFQN  180
RRARFKRKRK QASITTDSV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182190ARFKRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020079910.18e-52WUSCHEL-related homeobox 8-like
SwissprotQ5QMM39e-50WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A0K9Q6921e-147A0A0K9Q692_ZOSMR; WUSCHEL-related homeobox 14
STRINGXP_008781303.15e-50(Phoenix dactylifera)
STRINGMLOC_56124.26e-50(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38983776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.13e-40WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]