PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma101g00600.1

Common Name

ZOSMA_101G00600

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 336aa MW: 37631.7 Da PI: 7.4517

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma101g00600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00068	261	283	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C k F + + ++H +++ Zosma101g00600.1 261 FMCRKCRKAFAVRGDWRTHEKNC 283 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.07E-5	170	199	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-5	177	196	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.38	177	199	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.64	177	204	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	179	199	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	224	256	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.85E-5	247	281	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-4	248	281	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	89	261	281	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MADRYTNFLE GYLFYIPLSS TNLAQPPPPP PPLLSHHQTC NLYNNYINIQ PNINSPPSPP 60 LREALPLLSM IPTKCHETEN DGKDCIMDGD GDYDYDDQEG VAVTLHIGLP SSGPADLIPT 120 RVSDIEESGL PTPAGNPISR LSGGEVFPST SSAIGSLNKG QYWIPTPSQI LIGPTHFTCP 180 VCCKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTAMLR LPCYCCAQGC RNNIDHPRSK 240 PLKDFRTLQT HYKRKHGIKP FMCRKCRKAF AVRGDWRTHE KNCGKIWYCV CGSDFRHKRS 300 LKDHIKAFGL GHAAYGFDVF EEEEDPSSEI EQDCI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008798774.1	1e-147	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-119	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0K9Q5D0	0.0	A0A0K9Q5D0_ZOSMR; Zinc finger-like protein
STRING	XP_008798774.1	1e-146	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-115	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Zosma101g00600.1

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]