PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc10454.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GeBP

Protein Properties

Length: 125aa MW: 13047.1 Da PI: 4.1497

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc10454.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	51.3	3.2e-16	70	125	2	54
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksql 54 lfqrlw++eDeiv+L+++ +f+a++g+ +++ d++ fye ++++++ ++ksql Zmw_sc10454.1.g00010.1.am.mk 70 LFQRLWTDEDEIVILRAFAEFTAQRGTafASHQyDTTPFYEDMRGRLQTGFTKSQL 125 79***********************9977778*******************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	6.4E-12	71	125	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MVDDPSAAAG GGAMVSSSFP DADAYGNGDS EDIDFPAGPN SHASFSAAPA TTAATSAGAG 60 GPGSGERRAL FQRLWTDEDE IVILRAFAEF TAQRGTAFAS HQYDTTPFYE DMRGRLQTGF 120 TKSQL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794014.1	3e-51	probable transcription factor At3g04930
TrEMBL	A0A368SQE6	4e-51	A0A368SQE6_SETIT; Uncharacterized protein
STRING	Pavir.Ib01769.1.p	3e-52	(Panicum virgatum)
STRING	GRMZM2G026417_P01	1e-50	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123