PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc08629.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 575aa MW: 62633.2 Da PI: 10.6586

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc08629.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	189	211	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+++F r L H++ H Zmw_sc08629.1.g00010.1.am.mk 189 YRCAMCPMTFGRETALFGHMKAH 211 9********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14703	9.13E-12	12	45	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.5E-5	22	45	No hit	No description
Pfam	PF13912	3.1E-4	188	213	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.07E-7	188	211	No hit	No description
PROSITE profile	PS50157	9.868	189	216	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0055	189	211	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	191	211	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.07E-7	388	415	No hit	No description
SMART	SM00355	36	393	415	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	0.0029	400	416	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence Send to blast
EGLPPKHMLS EVDTKRAKQQ YAQRSRVRKL QYIAELEKKV QTLQAPKKNP SPSPPPPQHD 60 AIGHRLILRS PSHSRLAQPC EKGVEEPIRF GKKSEARPCR GEPRVPRHGN MEDGRHRSGC 120 NYSVADVNLS KRSRRSGTSR ELAALQRSSA LQISLVGVSP HREGKVVGGI NIGEPSTDGG 180 VSSVDGQVYR CAMCPMTFGR ETALFGHMKA HERAVSVEVT PPKRIRNYHH PKLKAVKETS 240 SSVADLTLSK GWGATSRHCL RRNHTVVDPP PAAAEDARVV QSRESVSVVL SDLVGMHIRE 300 DDPDQPWVPE TVQDVAAALI SGGSGKAIAI SGSKHKLWRS EFSSPQVLGG HVASHRRCKK 360 GSKEKLDAQR AAAAMVAAFN SCTALPRIPE KRHACRLRPK VFESGSVLRG HMRTHYIPKI 420 DLDGNASSFA AAVPASEATP NSSSLAHTML NQEDEPPVEA TKWNRNASAL RARAKVRSKP 480 LPAVLALPAP NKEAQPPKVL AMAGNGTAGH VQGTMSIGSS HTFTVRTLFP SAPWQNQEEN 540 PVEEMLAAPG EPSRRNACST RKPQTQHPSL WRQHC

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence Send to blast

EGLPPKHMLS EVDTKRAKQQ YAQRSRVRKL QYIAELEKKV QTLQAPKKNP SPSPPPPQHD  60
AIGHRLILRS PSHSRLAQPC EKGVEEPIRF GKKSEARPCR GEPRVPRHGN MEDGRHRSGC  120
NYSVADVNLS KRSRRSGTSR ELAALQRSSA LQISLVGVSP HREGKVVGGI NIGEPSTDGG  180
VSSVDGQVYR CAMCPMTFGR ETALFGHMKA HERAVSVEVT PPKRIRNYHH PKLKAVKETS  240
SSVADLTLSK GWGATSRHCL RRNHTVVDPP PAAAEDARVV QSRESVSVVL SDLVGMHIRE  300
DDPDQPWVPE TVQDVAAALI SGGSGKAIAI SGSKHKLWRS EFSSPQVLGG HVASHRRCKK  360
GSKEKLDAQR AAAAMVAAFN SCTALPRIPE KRHACRLRPK VFESGSVLRG HMRTHYIPKI  420
DLDGNASSFA AAVPASEATP NSSSLAHTML NQEDEPPVEA TKWNRNASAL RARAKVRSKP  480
LPAVLALPAP NKEAQPPKVL AMAGNGTAGH VQGTMSIGSS HTFTVRTLFP SAPWQNQEEN  540
PVEEMLAAPG EPSRRNACST RKPQTQHPSL WRQHC

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP40629	3	3