PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07797.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 397aa    MW: 41736.4 Da    PI: 7.2081
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07797.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS197.77.1e-61203922374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sse 76 
                                   ++lL  cA av++g+l+++q+l   l elas +gd+++Rlaa+ ++AL +rl    +++ ++al++ + +  +      + 
  Zmw_sc07797.1.g00020.1.am.mk  20 EQLLNPCAAAVEAGNLSRVQHLFYVLGELASFSGDANHRLAAHGLRALTRRLPAaVGPGAAAALRVPPCECPTpafpgAEP 100
                                   689*************************************************99789999999966555544445776333 PP

                          GRAS  77 elaalkl..fsevsPilkfshltaNqaIleav.ege..ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgsp 150
                                   +l+  +l  f+evsP++ + + +aN aI +a+  g+  + +H++D+++s+G+QWp+Ll++L+  p  + pps+R+T+ g+ 
  Zmw_sc07797.1.g00020.1.am.mk 101 RLFRASLikFNEVSPWFALPNALANAAIAQAAvPGAepRPLHVVDLGVSHGVQWPTLLESLTRLPgaRVPPSVRLTVAGPT 181
                                   444334479********************986244467889*********************99965669*********96 PP

                          GRAS 151 esg.....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserde 226
                                   ++       +         L ++A+++++++ +    a++le++  + + + pgEal+V+l+++l +        ++er++
  Zmw_sc07797.1.g00020.1.am.mk 182 ATPpapfsLSPPGYDFSPHLLRYAKSINLQLAIGR--ASSLESV--HGF-TTPGEALVVCLQFRLGHAS------TDERSD 251
                                   6658777766777889999*************997..5666666..444.678**********999987......444779 PP

                          GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307
                                   +L+ v++l+P++vv++e +a   +++ + +f+  le  + +++s++a +    + r   E++ll+ e+   va+e a    
  Zmw_sc07797.1.g00020.1.am.mk 252 ILNKVRGLNPELVVLSELDAGG-DGTMAGEFAARLELLWRFLESTSAAF----KGRDGDEKRLLEAEAGTSVAAEAAG--- 324
                                   *****************99986.999*******************9997....6677778888999999999999998... PP

                          GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve....eesgslvlgWkdrpLvsvSaWr 374
                                     e  e Wrer+ +aGF++++++++a+++ak+llrk++  g+++     ++ g++ l Wk++p+ ++S Wr
  Zmw_sc07797.1.g00020.1.am.mk 325 --EGREAWRERMAAAGFEEAAFGDEAVESAKSLLRKYD-SGWEMAapasSSAGAVALRWKGQPVSFCSLWR 392
                                   ..8889********************************.55666544545577777**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.9281369IPR005202Transcription factor GRAS
PfamPF035142.5E-5820392IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
GKKGGGKGGA GSDRDTRWAE QLLNPCAAAV EAGNLSRVQH LFYVLGELAS FSGDANHRLA  60
AHGLRALTRR LPAAVGPGAA AALRVPPCEC PTPAFPGAEP RLFRASLIKF NEVSPWFALP  120
NALANAAIAQ AAVPGAEPRP LHVVDLGVSH GVQWPTLLES LTRLPGARVP PSVRLTVAGP  180
TATPPAPFSL SPPGYDFSPH LLRYAKSINL QLAIGRASSL ESVHGFTTPG EALVVCLQFR  240
LGHASTDERS DILNKVRGLN PELVVLSELD AGGDGTMAGE FAARLELLWR FLESTSAAFK  300
GRDGDEKRLL EAEAGTSVAA EAAGEGREAW RERMAAAGFE EAAFGDEAVE SAKSLLRKYD  360
SGWEMAAPAS SSAGAVALRW KGQPVSFCSL WRPACSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B7e-291539429421Protein SHORT-ROOT
5b3h_E7e-291539429421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318969.10.0nodulation-signaling pathway 1 protein
SwissprotQ4VYC81e-118NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A3L6S9L90.0A0A3L6S9L9_PANMI; Uncharacterized protein
STRINGOPUNC03G19880.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]