PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06604.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 217aa    MW: 23720 Da    PI: 4.5154
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06604.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-05194214222
                                     EETTTTEEESSHHHHHHHHHH CS
                         zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                                     +C+ C+k+F++ + L+ H + 
  Zmw_sc06604.1.g00020.1.am.mkhc 194 SCNSCSKTFNSEMALQDHKKA 214
                                     7*****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030666.2E-812135No hitNo description
SuperFamilySSF576679.07E-6188217No hitNo description
PROSITE profilePS5015710.554193217IPR007087Zinc finger, C2H2
PfamPF128741.8E-4195217No hitNo description
PROSITE patternPS000280195217IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAVKCVPGDD YILHLSQAAL GESKKANDNA IMYVKVDDQK LAIGTLSADK YPQIQFDLVF  60
EKEFELSHTS KAASVFFSGY KVLQPVEGDE MDLDSEEDED EEEEEEINNP GSSDEDDSSK  120
DDESDEDDEE ETPKKPEAGK KRVAENALKT PASDKKAKVA TLSGQKTGSK NTHVATPHPA  180
KQSSKTPKSG GSMSCNSCSK TFNSEMALQD HKKAKKH
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338944.11e-50PREDICTED: histone deacetylase HDT1-like
SwissprotQ6V9I62e-46HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A0D3GBQ02e-72A0A0D3GBQ0_9ORYZ; Uncharacterized protein
STRINGOBART05G28290.13e-73(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]