PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06590.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 374aa    MW: 40004 Da    PI: 8.6129
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06590.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045195217123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC+ CgksF +   L  H  tH
  Zmw_sc06590.1.g00030.1.am.mk 195 FKCSVCGKSFGSYQALGGHKTTH 217
                                   89********9999998888887 PP
2zf-C2H211.90.00068269291123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C+k F++   L  H r+H
  Zmw_sc06590.1.g00030.1.am.mk 269 HRCSICHKEFPTGQALGGHKRKH 291
                                   79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.2E-12195219IPR007087Zinc finger, C2H2
SuperFamilySSF576673.35E-9195217No hitNo description
PROSITE profilePS5015712.778195222IPR007087Zinc finger, C2H2
SMARTSM003550.0087195217IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-4195220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280197217IPR007087Zinc finger, C2H2
SuperFamilySSF576673.35E-9264291No hitNo description
PfamPF139122.0E-12268293IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058269291IPR007087Zinc finger, C2H2
SMARTSM003550.043269291IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280271291IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDMDRALPGQ RKAPGGLAYI PHPTDERRRS RLGQSSRHIY THTLVTTSLP FHHRSPQLRQ  60
VELPGFPFAS SPSVPSPPPT ASTERNNSRS GLEQPKLELS LIPIAMTTAM ELLHAALPEQ  120
QRHEQEEEAA LTTSISGDEG AHVPQGWAKR KRSRRQRSEE ENLALCLLML SRGGNHRVQA  180
PPLPAEPLTA AAAEFKCSVC GKSFGSYQAL GGHKTTHRTK QPARPATSGP VVEDAVPISA  240
IPPTVAELRE PATSSTAASS DGTTASRVHR CSICHKEFPT GQALGGHKRK HYDGGVGNSA  300
AASAELPAVA AAAAETSEVG SSGNGSSAAR AFDLNLPALP EFVWRCAKAG TMWEEDEEVQ  360
SPLAFKKPRL LMTA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463836.11e-107zinc finger protein 1
SwissprotQ424301e-101ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0Y0SZ201e-119A0A0Y0SZ20_9POAL; C2H2-type zinc finger protein
STRINGSb01g007170.11e-107(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113