PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc06275.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 387aa MW: 42353.3 Da PI: 5.652 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.7 | 1.3e-05 | 179 | 220 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR+ri +++ L+el+P + sk Ka +L + ++Y++sLq Zmw_sc06275.1.g00050.1.sm.mk 179 QVRRERISERMRFLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 220 67******************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.91E-8 | 157 | 224 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.6E-12 | 160 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.131 | 169 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0012 | 175 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-11 | 178 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 387 aa Download sequence Send to blast |
MAQCGGDLLS RRLHQETTVE GLCQGLLDLD EDMFGAMCSA VGYLQEWPDV SGTNLGVAAP 60 DAGNANDDDS CSGGGVRKRK TDSCLDAKVR DLSFFCESDH SDGCKRPRAK QQLISPSDPA 120 CEIAGKGKEE RPKAGTKKKA EVAAGQKTDY IHVRARRGQA TDSHSLAERN SKPNEFNAQV 180 RRERISERMR FLQELVPGCS KVTGKAGMLD EIINYVQSLQ KQVEVLGFHL CFFQLAFSSV 240 LTGQLLPLLL QFLSMKIAAS NPVVSFDIVE DLFGRQLKQA CDTAAPPALA LPDGQLQQSC 300 VQMSPMQQVH LHAGSFGFGL EMVVNSPYPL VAADGSNVSC LDLSTAMPVN VNLSIHKDMM 360 LGMELAMQMW YQASDFRYMT DLRQFDT |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813679.1 | 1e-111 | transcription factor bHLH49-like | ||||
TrEMBL | A0A0A9CZD0 | 1e-127 | A0A0A9CZD0_ARUDO; Uncharacterized protein | ||||
STRING | Si017630m | 1e-103 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8252 | 37 | 49 |