PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06162.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 459aa MW: 49135 Da PI: 8.1603

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06162.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.1	3.3e-32	380	438	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+ Zmw_sc06162.1.g00010.1.am.mk 380 LDDGYRWRKYGQKAVKNSAHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 438 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-32	366	438	IPR003657	WRKY domain
SuperFamily	SSF118290	7.98E-28	374	439	IPR003657	WRKY domain
PROSITE profile	PS50811	28.449	375	440	IPR003657	WRKY domain
SMART	SM00774	2.0E-38	380	439	IPR003657	WRKY domain
Pfam	PF03106	1.7E-25	381	438	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
HREDFDGRAT TTLRFTANTF GSVHSVPGLR GIEHEKAVAA HLSCLRFRGR RSHGPQLLSV 60 ENASADGQEE QRQRPLEGWR ASGGGVGRDG TERGGVGQLE VGRVALGMGR RVCSGDGEGE 120 REFPAGCGSN SATDELLTPA GPPDMHACAR SSPNTNHRST ETTEWMLLFH VAPGLCHGPA 180 LKTSPMQVAI NHPAGTCLRC SCTWQLHPSS FSMENQLQGD VDEAHALPSF PYFAAPSPPL 240 GPPSLSSDDH HQHGALAADL QQQQQQPVAA ACNSLLPLGG AGNQLQAPPR MVLPTMVDWS 300 SLLQQASLMT PAVPGLQEAA AQADQSGENH CGEVGASGSG SASGSKESKA GGKVGAGRSG 360 KKKVSRPRFA FQTRSVNDIL DDGYRWRKYG QKAVKNSAHP RSYYRCTHHT CNVKKQVQRL 420 AKDTSIVVTT YEGVHNHPCE KLMEALSPIL KQLQFLSQF

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

HREDFDGRAT TTLRFTANTF GSVHSVPGLR GIEHEKAVAA HLSCLRFRGR RSHGPQLLSV  60
ENASADGQEE QRQRPLEGWR ASGGGVGRDG TERGGVGQLE VGRVALGMGR RVCSGDGEGE  120
REFPAGCGSN SATDELLTPA GPPDMHACAR SSPNTNHRST ETTEWMLLFH VAPGLCHGPA  180
LKTSPMQVAI NHPAGTCLRC SCTWQLHPSS FSMENQLQGD VDEAHALPSF PYFAAPSPPL  240
GPPSLSSDDH HQHGALAADL QQQQQQPVAA ACNSLLPLGG AGNQLQAPPR MVLPTMVDWS  300
SLLQQASLMT PAVPGLQEAA AQADQSGENH CGEVGASGSG SASGSKESKA GGKVGAGRSG  360
KKKVSRPRFA FQTRSVNDIL DDGYRWRKYG QKAVKNSAHP RSYYRCTHHT CNVKKQVQRL  420
AKDTSIVVTT YEGVHNHPCE KLMEALSPIL KQLQFLSQF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-22	371	437	8	74	Probable WRKY transcription factor 4
2lex_A	2e-22	371	437	8	74	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969857.1	1e-108	probable WRKY transcription factor 56
TrEMBL	K3XLH8	1e-106	K3XLH8_SETIT; Uncharacterized protein
STRING	Si002751m	1e-107	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1100	38	133