PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06131.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 377aa MW: 41180.6 Da PI: 10.0567

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06131.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66	8e-21	257	334	2	79
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt qe+++Liea+r+++e+ g++ ++W++v +++++ g++rs++qC+++w+nl ++ykk+++ e+ +++ s + Zmw_sc06131.1.g00010.1.am.mk 257 WTLQETMLLIEAKRKVHEERHPGEQGLARWRWVEDYCWRAGCQRSQNQCNDRWDNLMRDYKKVRAYERAAGDGAPSYW 334 *****************************************************************9998766665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.269	249	313	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.2E-6	250	315	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.32E-6	252	314	IPR009057	Homeodomain-like
Pfam	PF13837	7.8E-15	255	336	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
LIVPKLISAT LKNDGHSQET SYRLRPLEQG PLQQVPPGAS RELLLHLLQA AFRVPEPLRN 60 AHGQNENQST HANLQRKKVR LSCGAHTGEL PLVAMARGSG GCCRLGGWVY GAATAEQVAV 120 GDRPVGRGGA RSDRWKPPPL PGKASAPLEA TTRVAPTMGP RMPVKLFLSP TPAWLVGLRR 180 LAGGLSVWVA FFPQQPPCDA SDVSQDQQQA SSLHSKSEAM EPMGGGGSDV LHGQKGGEEA 240 SRNGAPTASR DYRRGNWTLQ ETMLLIEAKR KVHEERHPGE QGLARWRWVE DYCWRAGCQR 300 SQNQCNDRWD NLMRDYKKVR AYERAAGDGA PSYWAMGRAE RKGSGLPSNL LREIYDGMTE 360 VVERKMSRTG SSGVAGG

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

LIVPKLISAT LKNDGHSQET SYRLRPLEQG PLQQVPPGAS RELLLHLLQA AFRVPEPLRN  60
AHGQNENQST HANLQRKKVR LSCGAHTGEL PLVAMARGSG GCCRLGGWVY GAATAEQVAV  120
GDRPVGRGGA RSDRWKPPPL PGKASAPLEA TTRVAPTMGP RMPVKLFLSP TPAWLVGLRR  180
LAGGLSVWVA FFPQQPPCDA SDVSQDQQQA SSLHSKSEAM EPMGGGGSDV LHGQKGGEEA  240
SRNGAPTASR DYRRGNWTLQ ETMLLIEAKR KVHEERHPGE QGLARWRWVE DYCWRAGCQR  300
SQNQCNDRWD NLMRDYKKVR AYERAAGDGA PSYWAMGRAE RKGSGLPSNL LREIYDGMTE  360
VVERKMSRTG SSGVAGG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3294	35	71