PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc06044.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 238aa MW: 26519.7 Da PI: 6.4084 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.6 | 8.8e-15 | 12 | 59 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ien++ r+ tf kRr+g+ K A LS+L++a+ a+++ s++gk+ + Zmw_sc06044.1.g00060.1.am.mk 12 FIENDRDRSLTFFKRRAGLYKAAADLSTLTGARLAIVLESESGKFSSF 59 8*******************************************9877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.4E-10 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.512 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-8 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 5.29E-16 | 6 | 62 | No hit | No description |
SuperFamily | SSF55455 | 3.4E-15 | 7 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-17 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-8 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-8 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MARRARRSGV SFIENDRDRS LTFFKRRAGL YKAAADLSTL TGARLAIVLE SESGKFSSFG 60 APATDPIVDA FLSGEDPMVY AYASEKQRAT IVELQNEGLR LEKDLVLENQ RRKEFIGMVK 120 ELQESSRVAK FVYDKVEDLD VDELHEMYRE LSHVHQEAQL LLRTTHQDAT VKGPTMDSYT 180 TTHPASSKVG SPNTNMVTIL HRVPDDAPTR TSSTKIGSFF HGATASTEEA SINTSYPQ |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971997.1 | 2e-60 | transcription factor RLM1 | ||||
TrEMBL | A0A1E5WGP1 | 5e-62 | A0A1E5WGP1_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G375707_P01 | 6e-58 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3089 | 22 | 76 |