PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05820.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 238aa MW: 26135.9 Da PI: 6.7943

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05820.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.7	2.1e-08	33	65	19	55
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 f+ LrellP++ ++K +Ka+ L +++eYI+ Lq Zmw_sc05820.1.g00040.1.sm.mkhc 33 MFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 65 599******9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.27E-7	33	69	No hit	No description
SuperFamily	SSF47459	4.45E-10	33	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.3E-6	33	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-14	34	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MEVWISDRTH HDRNTQPQSS VDAARSTTGD CAMFQILREL LPHSDQKRDK ATFLLEVIEY 60 IRFLQEKVQK YEATFPEWNQ ENAKILPWSK GQIPGDAVPD PSQVMRNGSS PGFNVTGKLD 120 DNHNTVTSAS GPQDQAETDR MTNNASSQCQ PQWTGPSPVH NCAMNSDMLN NQELAIDEGT 180 ISINLGKRAV KRPAAGVSFK STETHPSSNN KTGHQHMTLG GGVEAPSHAT KRQKSGGS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801928.1	1e-101	transcription factor BIM2-like isoform X8
TrEMBL	A0A2S3H0H7	1e-101	A0A2S3H0H7_9POAL; Uncharacterized protein
STRING	Si029604m	1e-95	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP762	37	128