PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05251.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 453aa    MW: 49884.1 Da    PI: 4.5432
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05251.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS273.75.7e-842024522254
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                   ++lL++cA  +s+ ++ +aqa++++l++++s +gdp qR+aay++e+Laar++ s++++ykal++++ +   +  +l+a++
  Zmw_sc05251.1.g00010.1.sm.mk 202 KQLLFDCAMSLSEYNTDEAQAIITELRQMVSIQGDPSQRIAAYLVEGLAARIVASGKGIYKALTCKDPP---TLYQLSAMQ 279
                                   589*****************************************************************9...89999**** PP

                          GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleet 161
                                   +++e++P++++++++aN aIlea +geervHiiDfdi+qG Q+++L+q L + +++p +lRiTgv++pe++      l+ +
  Zmw_sc05251.1.g00010.1.sm.mk 280 ILFEICPCFRLGFMAANYAILEACKGEERVHIIDFDINQGSQYITLIQFLKNNANKPRHLRITGVDDPETVqrPIGGLRVI 360
                                   *********************************************************************99878899**** PP

                          GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242
                                   g+rL+k+Ae +gv+fef++ v  ++ d+++ +L+++pgE l++n+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++v
  Zmw_sc05251.1.g00010.1.sm.mk 361 GQRLEKLAEDCGVSFEFRA-VGANIGDVTPAMLDCRPGEGLVINFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLV 440
                                   *******************.799********************************************************** PP

                          GRAS 243 eqeadhnsesFl 254
                                   eq+a++n+++Fl
  Zmw_sc05251.1.g00010.1.sm.mk 441 EQDANTNTAPFL 452
                                   ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.704175453IPR005202Transcription factor GRAS
PfamPF035142.0E-81202452IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSFVRRVDPS TAYSDNLYVH KFASPSSNFA PRRFGSDTQL FRYGPEPYNA EYGHMSFTGA  60
PSAEFQNSLC SQQASLTAYR ITADGLSTTV EDIQSNSCSD VAKNSPVLSN VSQQNSQSAS  120
DSQSSGIEVE FDDDEMRLKL QELEHALLGD GDDILFEISQ TGSINDEWAD PMKNVLTPTS  180
PKDSESSVSC AVSNNRATRT PKQLLFDCAM SLSEYNTDEA QAIITELRQM VSIQGDPSQR  240
IAAYLVEGLA ARIVASGKGI YKALTCKDPP TLYQLSAMQI LFEICPCFRL GFMAANYAIL  300
EACKGEERVH IIDFDINQGS QYITLIQFLK NNANKPRHLR ITGVDDPETV QRPIGGLRVI  360
GQRLEKLAED CGVSFEFRAV GANIGDVTPA MLDCRPGEGL VINFAFQLHH LPDESVSIMN  420
ERDQLLRMVK GLQPKLVTLV EQDANTNTAP FLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-3320844326252Protein SCARECROW
5b3h_A3e-3320844325251Protein SCARECROW
5b3h_D3e-3320844325251Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819107.10.0scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ31e-137SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2S3HPD70.0A0A2S3HPD7_9POAL; Uncharacterized protein
TrEMBLA0A3L6RFL20.0A0A3L6RFL2_PANMI; Scarecrow-like protein 1
STRINGSi000832m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]