PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05190.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 272aa    MW: 29421.3 Da    PI: 7.1532
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05190.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-11111156454
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   +h e+Er+RRd+ N  f  Lr  +P+       +++Ka+ L  A  YI +L
  Zmw_sc05190.1.g00020.1.am.mk 111 SHVEAERKRRDKQNRLFCDLRAAVPTV-----SRMDKASLLADAASYITEL 156
                                   799***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.859107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.27E-11110161No hitNo description
Gene3DG3DSA:4.10.280.101.9E-14111170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-14111179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-9111156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-10113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDGLLSPCSS FSPPSPASFS HVGNPVIEFA SCEVPEQWLH DVVAPKYEGY DHGDEELVWP  60
MGCTRSPASE HSEKPPPQQQ DPSVTAPAQR SAGIKRRARK PGPRQDVPFV SHVEAERKRR  120
DKQNRLFCDL RAAVPTVSRM DKASLLADAA SYITELRARV ARLEAEAKRA GPKTRPWEPV  180
TASRGGAVEE AVEVRMVGSD AAAVRVLGGD PHAPARLMDA LRALDLNVQH ACVSRVNGVT  240
VQDVVVDVPT RLLDGEGLRT LLAQMLQGSG CS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-15110166763Transcription factor MYC2
5gnj_B5e-15110166763Transcription factor MYC2
5gnj_E5e-15110166763Transcription factor MYC2
5gnj_F5e-15110166763Transcription factor MYC2
5gnj_G5e-15110166763Transcription factor MYC2
5gnj_I5e-15110166763Transcription factor MYC2
5gnj_M5e-15110166763Transcription factor MYC2
5gnj_N5e-15110166763Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120ERKRRD
2116121RKRRDK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020404956.15e-87transcription factor MYC2
TrEMBLA0A453LCH43e-85A0A453LCH4_AEGTS; Uncharacterized protein
STRINGTraes_5DL_5DA6E1A09.18e-90(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130