PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04986.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 220aa MW: 23960.1 Da PI: 9.4682 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1.1e-11 | 105 | 174 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC..................TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas...............kapskKlsKaeiLekAveYIksLq 55 +r+ah ++Er+RR+ +N+ ++ Lr l+P ++ ++ + + a+++ A++Y+k+L+ Zmw_sc04986.1.g00010.1.sm.mk 105 QRMAHIAVERNRRRLMNDHLASLRALIPASYiprysvimfvtnhatFEYVEQGDQATVVGGAIDYVKQLE 174 79***************************888************9988899999*************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-13 | 96 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-13 | 103 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.49E-8 | 103 | 171 | No hit | No description |
PROSITE profile | PS50888 | 13.795 | 104 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-9 | 105 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-7 | 110 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MAVMEQWADQ QAASATAGTA QMPFLALLQG AVLDNDDANR CKRADAADID LLESCVTQAA 60 AAVTVASSST SATKAESRRR KRPRPRPRAA PQQKKRKKPE EAESQRMAHI AVERNRRRLM 120 NDHLASLRAL IPASYIPRYS VIMFVTNHAT FEYVEQGDQA TVVGGAIDYV KQLEQQLLAL 180 QAEATARRGC RGSACAMATA ATSDGVFVSP QYTSYSEART |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 87 | RRRKRPRPRPR |
2 | 79 | 85 | RKRPRPR |
3 | 79 | 97 | RKRPRPRPRAAPQQKKRKK |
4 | 80 | 84 | KRPRP |
5 | 93 | 97 | KKRKK |
6 | 105 | 116 | RMAHIAVERNRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798239.1 | 7e-51 | transcription factor bHLH57-like | ||||
TrEMBL | A0A1D6PKX5 | 3e-62 | A0A1D6PKX5_MAIZE; Putative HLH DNA-binding domain superfamily protein | ||||
STRING | OB03G11710.1 | 4e-58 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7957 | 33 | 44 |