PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04984.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C3H | ||||||||
Protein Properties | Length: 367aa MW: 39184.8 Da PI: 6.6183 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.2 | 2.1e-06 | 92 | 113 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++ ++ G Ck+Gd C FaHg Zmw_sc04984.1.g00030.1.sm.mk 92 AACPDLRK-GGCKRGDGCEFAHG 113 67999999.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.12 | 88 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.338 | 89 | 115 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-4 | 92 | 113 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-4 | 94 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 18 | 123 | 146 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MMMMGEGAAH APPWQQSLAS SGGGVDGDDA YVEEEDPVAA LDAYASDEFR MYEFKVRRCA 60 RGRSHDWTDC PFTHSGEKAR RRDPRRFHYS GAACPDLRKG GCKRGDGCEF AHGVFECWLH 120 PARYRTQPCN DGTACRRRVC FFAHTPDQLR VLPPQQQQQS GASPRAGSSP LAELYDGSPL 180 RRQAFESYLT KSMMSSSPTS TLVSPPRSPP SESPPVSPDA AAFRRGSWPA VGSPVNDVVA 240 SLRQLRLGGS PSGASLLAGA YPSGAYGSPK STGLYSLPST PTGPSPVTIT TPSGATVVTI 300 DRLNLGLLEE VEPVMERVES GRALREKVFE RLSKEAAVPT DAAAAATAEG AAPVTAPDVG 360 WVTDLVD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960911.1 | 1e-180 | zinc finger CCCH domain-containing protein 35 | ||||
Swissprot | Q6L4N4 | 1e-160 | C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35 | ||||
TrEMBL | A0A0A9E0J0 | 0.0 | A0A0A9E0J0_ARUDO; Uncharacterized protein | ||||
STRING | Si024826m | 1e-176 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Publications ? help Back to Top | |||
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