PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04984.1.g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 367aa    MW: 39184.8 Da    PI: 6.6183
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04984.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-0692113426
                                   ---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                   + C++ ++ G Ck+Gd C FaHg
  Zmw_sc04984.1.g00030.1.sm.mk  92 AACPDLRK-GGCKRGDGCEFAHG 113
                                   67999999.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.1288114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.33889115IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-492113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-494115IPR000571Zinc finger, CCCH-type
SMARTSM0035618123146IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MMMMGEGAAH APPWQQSLAS SGGGVDGDDA YVEEEDPVAA LDAYASDEFR MYEFKVRRCA  60
RGRSHDWTDC PFTHSGEKAR RRDPRRFHYS GAACPDLRKG GCKRGDGCEF AHGVFECWLH  120
PARYRTQPCN DGTACRRRVC FFAHTPDQLR VLPPQQQQQS GASPRAGSSP LAELYDGSPL  180
RRQAFESYLT KSMMSSSPTS TLVSPPRSPP SESPPVSPDA AAFRRGSWPA VGSPVNDVVA  240
SLRQLRLGGS PSGASLLAGA YPSGAYGSPK STGLYSLPST PTGPSPVTIT TPSGATVVTI  300
DRLNLGLLEE VEPVMERVES GRALREKVFE RLSKEAAVPT DAAAAATAEG AAPVTAPDVG  360
WVTDLVD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960911.11e-180zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N41e-160C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLA0A0A9E0J00.0A0A0A9E0J0_ARUDO; Uncharacterized protein
STRINGSi024826m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]