PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04930.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 403aa MW: 42177.3 Da PI: 9.3593

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04930.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102	3.4e-32	235	291	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqK vk+s+fprsY+rCt ++C+vkk+vers+edp+vv++tYeg+H h Zmw_sc04930.1.g00100.1.am.mk 235 EDGYRWRKYGQKAVKNSPFPRSYFRCTNSKCTVKKRVERSSEDPSVVITTYEGQHCH 291 8******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.2E-33	219	292	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-27	226	292	IPR003657	WRKY domain
PROSITE profile	PS50811	29.207	229	294	IPR003657	WRKY domain
SMART	SM00774	4.8E-38	234	293	IPR003657	WRKY domain
Pfam	PF03106	2.4E-25	235	291	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MAGAAGYGPQ GAGEDWPFAG AVDAFADYSS VLTELGWPGG LAADLSVLDL PEATRLAPEL 60 ARPEEIVAAP AMSGDAAGAS SSSSGDGPGH GAARGNGDQK PADEAVAAVR HTALRAPRLR 120 LAGRYADPAR AASIGSRAAI CVRGLDGSSF SMQLRRTFLA DPHVNSSVGG ERHLVGWWGC 180 GHGGPSLDRP TNFFVSPTFA KRVAVKPAAP AKKGPKRARQ PRFAFMTKSE IDHLEDGYRW 240 RKYGQKAVKN SPFPRSYFRC TNSKCTVKKR VERSSEDPSV VITTYEGQHC HYTAAAAAFQ 300 SGAGPASAHR IHSAAAAVAL AEQMPFVAAA QRRLSPFHPQ SSPPSCSETA VDVTAALASS 360 LQQYLSGSER VSMPSTPSSV AQAPSSVEKG LLDDIVPHGV RHG

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MAGAAGYGPQ GAGEDWPFAG AVDAFADYSS VLTELGWPGG LAADLSVLDL PEATRLAPEL  60
ARPEEIVAAP AMSGDAAGAS SSSSGDGPGH GAARGNGDQK PADEAVAAVR HTALRAPRLR  120
LAGRYADPAR AASIGSRAAI CVRGLDGSSF SMQLRRTFLA DPHVNSSVGG ERHLVGWWGC  180
GHGGPSLDRP TNFFVSPTFA KRVAVKPAAP AKKGPKRARQ PRFAFMTKSE IDHLEDGYRW  240
RKYGQKAVKN SPFPRSYFRC TNSKCTVKKR VERSSEDPSV VITTYEGQHC HYTAAAAAFQ  300
SGAGPASAHR IHSAAAAVAL AEQMPFVAAA QRRLSPFHPQ SSPPSCSETA VDVTAALASS  360
LQQYLSGSER VSMPSTPSSV AQAPSSVEKG LLDDIVPHGV RHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-25	224	291	7	74	Probable WRKY transcription factor 4
2lex_A	7e-25	224	291	7	74	Probable WRKY transcription factor 4

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1E5W3W4	6e-71	A0A1E5W3W4_9POAL; Putative WRKY transcription factor 57
STRING	Pavir.J37837.1.p	1e-69	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2125	37	96