PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04541.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 349aa MW: 36930.1 Da PI: 5.3877 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 56.1 | 7.3e-18 | 137 | 212 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EE..............EEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprs..............YYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg +WrKYGqK++ g+++prs Y+rCt++ gC++ k+v+r++ dp +++++Y+g+H++ Zmw_sc04541.1.g00040.1.am.mk 137 LDDGLSWRKYGQKDILGAKYPRSappapslfrcateaYFRCTYRhteGCHANKHVQRTDGDPLLFDVVYHGNHTCA 212 58********************777777777777777*****999999**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.7E-23 | 124 | 213 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-18 | 131 | 213 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.57 | 132 | 209 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-33 | 137 | 213 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-16 | 138 | 211 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MEGLSEERCT LVGELVQVLE MARKLDGYMA GQLGGGGEER CRALVATMRA SIDRSVHIAM 60 SFCGAENAEH LPVFGGQPES PPSGGCGGDG SPRSAGSDQA GDSRGRRNAG GPCKKRKTLP 120 KWTTQVRVSA VQDMTPLDDG LSWRKYGQKD ILGAKYPRSA PPAPSLFRCA TEAYFRCTYR 180 HTEGCHANKH VQRTDGDPLL FDVVYHGNHT CAQAPPAAAH PSNLATPPAT SAENENSPPQ 240 PQPGLGLEQA NASPVLERNV LQRFLPPSNN NPAAGANENG FETSGGFPAG SIAVASTFMS 300 PPAAQATLES QPVNAPAVEL ASATNSPMGD MYFIFPLDDA ADFLETDYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-16 | 137 | 211 | 8 | 68 | OsWRKY45 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969356.1 | 1e-106 | probable WRKY transcription factor 53 | ||||
TrEMBL | A0A3L6SIL2 | 1e-107 | A0A3L6SIL2_PANMI; Putative WRKY transcription factor 53 | ||||
STRING | Si002203m | 1e-106 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3355 | 31 | 83 |