PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04539.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 268aa MW: 30029.7 Da PI: 7.1197 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.4 | 4.6e-07 | 38 | 86 | 1 | 53 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +++ ++erE+r Rd+ N+ f+eL ++l ++ + + Ka iL +++ +k+ Zmw_sc04539.1.g00040.1.am.mkhc 38 KKVHKSEREKRKRDKQNDLFDELGKMLEPD----RQNNGKACILSDTTRIVKD 86 678899*********************997....4667777788777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 7.3E-10 | 35 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-12 | 35 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.693 | 37 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-5 | 38 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.94E-4 | 40 | 87 | No hit | No description |
SMART | SM00353 | 0.0017 | 43 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MVPRDKAHDG ADAAHPAPPE TLVQGPILNK KCEKKVPKKV HKSEREKRKR DKQNDLFDEL 60 GKMLEPDRQN NGKACILSDT TRIVKDLFSQ VESLRKENSA LKNESHYVAL ERNELFDENN 120 LIRNDILGLK NELRMRLEGS PIWTHGTARS NLLLPHPGTQ VFALQHSPHT PVIATMALPQ 180 QQSAVLDPSY AAPRRELQLF PETTATEDNE RRPQDQGISN HVTRPQARYP TTTVTLPGHV 240 YPVLPRMEDE HCSNGTTGSG EEDGPGNA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804247.1 | 1e-145 | transcription factor BHLH062-like | ||||
Refseq | XP_025804248.1 | 1e-145 | transcription factor BHLH062-like | ||||
Swissprot | Q69V10 | 1e-113 | BH062_ORYSJ; Transcription factor BHLH062 | ||||
TrEMBL | A0A2S3H2P0 | 1e-144 | A0A2S3H2P0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba00364.1.p | 1e-146 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 |
Publications ? help Back to Top | |||
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