PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04402.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | AP2 | ||||||||
Protein Properties | Length: 531aa MW: 56901 Da PI: 7.2298 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.8 | 9.9e-12 | 247 | 303 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g Zmw_sc04402.1.g00120.1.sm.mkhc 247 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 303 789******************333.44555535555.779999**************98 PP | |||||||
2 | AP2 | 46.4 | 1e-14 | 348 | 397 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Zmw_sc04402.1.g00120.1.sm.mkhc 348 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 397 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.48E-14 | 247 | 313 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.21E-17 | 247 | 313 | No hit | No description |
SMART | SM00380 | 9.1E-23 | 248 | 317 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.963 | 248 | 311 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-8 | 248 | 303 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-12 | 248 | 312 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-6 | 249 | 260 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.39E-23 | 346 | 407 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-18 | 346 | 407 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.203 | 347 | 405 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-33 | 347 | 411 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-18 | 347 | 405 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-9 | 348 | 397 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-6 | 387 | 407 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MDMNNGWLGF SLSSSAAGGY GDSAGCGGRA SGDHGEGSCS SPAAVSPLVA MPLQSDGSLP 60 YASPGWRHAE AEGPKLEDFM SVTCSNKSGC IHDSSRADHA KYHEVHDLQP LSGSYYYHGH 120 GSGGSGGIDL EINVNAPPIS GHPDHNVLAP QDHHHHFLPH HGQYFLGTPA NPAGPPFGAM 180 PMYNAAPGIG SSMSISGIKS WLREAMYVPE RSSALSLSVA DVPGEPLPAP MPVAARRPAQ 240 TFGQRTSQFR GVTRHRWTGR YEAHLWDNTC RKEGQTRKGR QGGYDKEEKA ARAYDLAALK 300 YWGPSTHINF PLSTYEKELE EMKNMSRQEF IAHLRRNSSG FSRGASMYRG VTRHHQHGRW 360 QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFDISKYD VKRICASTHL 420 MGGDAACRRY SPTRPLDGPP ELAVVGADGG TDRSDAPGGD VQGASDNSEN SEGHRGAHLL 480 HGLQYAPAMK FEAGEGSGGG NWMTAAAAAA ARPVGGVTTV HQLPVFTLWN D |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796834.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A3L6SCK6 | 0.0 | A0A3L6SCK6_PANMI; Uncharacterized protein | ||||
STRING | Si035073m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |