PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04253.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 652aa    MW: 68269.3 Da    PI: 9.7247
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04253.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.7e-13114163355
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   ++h ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Zmw_sc04253.1.g00030.1.am.mk 114 TSHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVNYIKELQ 163
                                   68*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.589111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-17113187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-13114167No hitNo description
Gene3DG3DSA:4.10.280.105.6E-13114175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-12117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF519051.94E-8520574IPR023753FAD/NAD(P)-binding domain
Gene3DG3DSA:3.50.50.602.5E-9525571IPR023753FAD/NAD(P)-binding domain
PfamPF012661.3E-8529571IPR006076FAD dependent oxidoreductase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0016491Molecular Functionoxidoreductase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MAEALCDQLF ADDVLDGELH HHPSYAEDLF GILEAWEDCV SGGSSVNTPR GGGVDARGSK  60
RRPPQGGCDV DSRDPDDGSS MVVQEPAKRQ RCSPSPVAVV STAGEGGAGK STATSHIAVE  120
RNRRKQMNEH LAVLRSLMPC FYVKRGDQAS IIGGVVNYIK ELQQLLQSLE AKKQRKAYAN  180
QVLSPRPPPA CCSPRPPLSP RPPLPFKSTP PMSPRPAVPI SPRTPPTTSS SPYNKLICRQ  240
PSLSLSLPLP LPLPLPLPLP PAPGSAYASP ATTPTTSQES AAAASSYLPS LDAIAAELCA  300
YAANGKQQAT APAGGGGVVV LPEVKVEFSG ANLVVKTVSQ RAPGQAVKVI AALEGRSLEI  360
LHAKISAVDD TAVNSFTIKG SCFAYHRLSL PPPPAPPLPV SIAHHRLAPE LAASPTPPPP  420
AYRLAEPSFA ARPLLRHCRP SLALPPPPNS CGTASSLASA SHLSLQHPLP MDPAAAFAAA  480
PKLGPALFSS VTSPSSRPSL RLSVRGPRRG RPLLALPPRS QPGDVSHHDV VVVGAGIVGL  540
AIARHLLLHT PLSVAVADAA VPCSGATGAG THTRLPFWLS FVLMVVELEM RCYERFGDRV  600
VALQGRGTYG CRTGRPGVTP GSWRCGASSC GRSSRLRLTA REAEVRGRGW GG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437061.11e-133transcription factor SPEECHLESS
TrEMBLA0A1E5UP881e-133A0A1E5UP88_9POAL; Transcription factor SPEECHLESS
STRINGSb10g020490.11e-133(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577