PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04218.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 324aa    MW: 35336.3 Da    PI: 7.0121
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04218.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09186226954
                                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    r RR+ri +++  L++l+P       +K++ a++L +A++YIk L
  Zmw_sc04218.1.g00030.1.am.mk 186 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 226
                                   699*****************87.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.459177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15182243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-14183237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-15183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-7187226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.67E-7200231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDNITHNSSS SSSWDLDMSL GSHHHPLLFD SHPASAPPPP PPLPFHLSSS PSHHHHPPLH  60
PTHGHHLHHP SLDPSPSSSL FPPPHHRLHH LALDIDPASS HHHRHQHEYG EQPEHHHEQD  120
ELRQEAAAAG GQQDERAEDI EEELGAMKEM MYRIAAMQPV DIDPATIKKP RRRNVRISDD  180
PQSVAARHRR ERISERIRIL QRLVPGGTKM DTASMLDEAI RYIKFLKRQV QDLQHQPPQQ  240
QQFPAAAGAA VAGPSTSLVG PPGRPGAPFL PLGPGPLIDW AGLVRPVDVH GPTSSSSSSS  300
MGGAHAALGF GFSSGAGQSS HGMH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822758.11e-115transcription factor HEC2-like
TrEMBLA0A3L6PKU31e-123A0A3L6PKU3_PANMI; Transcription factor HEC1-like
STRINGSi015197m1e-104(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246