PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04188.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 462aa MW: 49199.1 Da PI: 9.1069

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04188.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.9	8.9e-14	118	168	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h ++Er+RR+++N+ ++ Lr+l+P + k+ + a+i +v+YIk+Lq Zmw_sc04188.1.g00110.1.am.mk 118 KMSHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 168 789***********************9...9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.40E-14	114	172	No hit	No description
SuperFamily	SSF47459	1.96E-17	116	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.555	116	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-13	118	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-11	118	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-12	122	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MGDGGLCELL VDGRCDQLRH VSDAEDLFSI LETWEECMKG GLGGPRGSAA VFNSQVDCTG 60 GGSSVADAGA ARPTSTTMGN SRRRSVVDEA KGGSAPVQKK QKGTVAEPAP DDDDGAAKMS 120 HIAVERNRRK QMNEHLAVLR SLMPCFYVKR GDQASIIGGV VDYIKELQQV LRSLEAKKHR 180 KACADQVLSP RPGTAAASPR ALLDMSSMPQ ISRRVAVPIS PRTPTRPGSP YYVPGCGGRP 240 PHPAAAYMMA TSTQATTPTG SSSSCSSSHD QQQQNYSPYL PTLDSIVTEL AVHASAASRP 300 ILPDVKVEFA GPNLVLKTVS RRAPGQALKI IAALESLSLE ILHVSVSTVE DTMVHSFTIK 360 IGVECELSAE ELVQEIQRTF WAVRLAIDAP PIFTKNFDAL RPPRAAAKPR PLRLCPIAAP 420 YLAASTSGAP TLKSRAGPYP ARRRQAPTLA PSPPKSDIAD RS

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MGDGGLCELL VDGRCDQLRH VSDAEDLFSI LETWEECMKG GLGGPRGSAA VFNSQVDCTG  60
GGSSVADAGA ARPTSTTMGN SRRRSVVDEA KGGSAPVQKK QKGTVAEPAP DDDDGAAKMS  120
HIAVERNRRK QMNEHLAVLR SLMPCFYVKR GDQASIIGGV VDYIKELQQV LRSLEAKKHR  180
KACADQVLSP RPGTAAASPR ALLDMSSMPQ ISRRVAVPIS PRTPTRPGSP YYVPGCGGRP  240
PHPAAAYMMA TSTQATTPTG SSSSCSSSHD QQQQNYSPYL PTLDSIVTEL AVHASAASRP  300
ILPDVKVEFA GPNLVLKTVS RRAPGQALKI IAALESLSLE ILHVSVSTVE DTMVHSFTIK  360
IGVECELSAE ELVQEIQRTF WAVRLAIDAP PIFTKNFDAL RPPRAAAKPR PLRLCPIAAP  420
YLAASTSGAP TLKSRAGPYP ARRRQAPTLA PSPPKSDIAD RS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799200.1	1e-154	transcription factor SPEECHLESS-like
TrEMBL	A0A3L6QHE7	1e-155	A0A3L6QHE7_PANMI; Transcription factor SPEECHLESS-like
STRING	Pavir.Aa02723.1.p	1e-154	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3484	35	77