PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04154.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 306aa MW: 32319.6 Da PI: 8.6811

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04154.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00091	117	139	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k+F++ L H +H Zmw_sc04154.1.g00020.1.am.mk 117 YECRTCNKCFPTFQALGGHRASH 139 99**********99999998887 PP
2	zf-C2H2	11.9	0.00068	206	228	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H Zmw_sc04154.1.g00020.1.am.mk 206 HECSICGAEFASGQALGGHMRRH 228 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.8E-10	116	141	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.74E-8	116	139	No hit	No description
PROSITE profile	PS50157	10.014	117	144	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.16	117	139	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	119	139	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.74E-8	201	228	No hit	No description
Pfam	PF13912	1.3E-12	205	229	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.64	206	233	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.016	206	228	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	208	228	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MSRSWHQPLG VVKRKRTKRP RHQPPASSAS SSESTTTEEE DMAHCLILLA QGGAGAVDSK 60 PSPAPQPPHP PVVQQQAQPS PPTATPPPVV KSERYTSRKY TEAATTADGV KAGFYVYECR 120 TCNKCFPTFQ ALGGHRASHK KPRLPAGDEE IASAINNKPP AAMTTTASPP PPPPPRVDIA 180 VFPDVTTALS LNSHVNTGSS GKLRVHECSI CGAEFASGQA LGGHMRRHRP LNAPERTAAV 240 TAISMDTKKE GSASINLELD LNLPAPSDED AVSLALPPVV LGLGQFNDGK KAGLMLTASA 300 LVDCHY

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00487	DAP	Transfer from AT5G04390	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822199.1	1e-123	zinc finger protein ZAT5-like
TrEMBL	A0A2T7FE55	1e-123	A0A2T7FE55_9POAL; Uncharacterized protein
STRING	Sb04g037850.1	1e-113	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2013	32	85