PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03975.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 538aa    MW: 57026 Da    PI: 9.5562
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03975.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013231252223
                                   EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                   +C  C+++F ++  L  H+r H
  Zmw_sc03975.1.g00050.1.am.mk 231 TCRLCSRRFASPRALAGHMRAH 252
                                   6*******************99 PP
2zf-C2H210.90.0014451473123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++Cp+C ++Fs+   L  H r+H
  Zmw_sc03975.1.g00050.1.am.mk 451 HQCPHCFRVFSSGQALGGHRRSH 473
                                   79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.035230252IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577230253IPR007087Zinc finger, C2H2
SuperFamilySSF576671.95E-6231252No hitNo description
PfamPF138945.3E-4231252No hitNo description
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
SuperFamilySSF576671.95E-6382406No hitNo description
PfamPF139121.4E-9386411IPR007087Zinc finger, C2H2
PROSITE profilePS501578.517387416IPR007087Zinc finger, C2H2
SMARTSM0035555387407IPR015880Zinc finger, C2H2-like
PfamPF139125.3E-9451473IPR007087Zinc finger, C2H2
SMARTSM003550.15451473IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221451478IPR007087Zinc finger, C2H2
PROSITE patternPS000280453473IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MALPTSGPPP LPPLKKVRQQ VTVEYSAVPR PVTDGYPKIG GQGQSRKMTG KRGGGGEATS  60
SATDWRLNGR NTWLGHRRTH DDGKETGCCC CCYGDAWAAM LPGEGDPVGL AANPPCVHAL  120
DLFLLPSLPR HPNFRLSPTX XXAPIRALTP LRFVSFTQLR CADAVPAATA KAGASQAGGG  180
NRTFSPGSDG REQQLSPSSA PNKARYFRRR ALSGAFVPRL VLQALAMAKN TCRLCSRRFA  240
SPRALAGHMR AHSIAAAKSQ ISSASSASTS VVAGGGAEKP VQGYVLREKP KRRVRLAESD  300
ISDSESETSG FPSSWPSAKH GHAAGSGDAE PVSSVSDGVT PEQDVAMLLV MLSRDSWPLP  360
PVMPSYQVDS DDECDARQPI AQKRTRYECP ACKKAFRSYQ ALGGHRASNV RGGKGGCCAP  420
PPPLYTPPPS PMQPLLARDG EEGGAWKPLP HQCPHCFRVF SSGQALGGHR RSHFCTAPVA  480
AEKTGAVPLP VPMKSLGCID LNLPPTWDDV ELSAVSDPFL SSKPGYESKQ SMAGKPFG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288294KPKRRVR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652618.11e-102PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A3L6Q7111e-107A0A3L6Q711_PANMI; Zinc finger protein ZAT1-like
STRINGOPUNC04G18700.11e-105(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377