PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03906.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 189aa MW: 20026.8 Da PI: 9.2262 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C + F ++ L H++ H Zmw_sc03906.1.g00040.1.sm.mk 87 FACHYCRRQFYSSQALGGHQNAH 109 78******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.85E-6 | 85 | 114 | No hit | No description |
PROSITE profile | PS50157 | 11.136 | 87 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MEVDQVGKEG RREKRLIGGG NGHRGQLDAA KVELDLLGGM VGSVVDFRPA AVRDVADQSS 60 SLPVLLDLVP PDQPPSTAAG LDPPQLFACH YCRRQFYSSQ ALGGHQNAHK RERTLARRRG 120 EVAPGPFGGL LVHGSPTPFA VHGASLVTAP ALGWVRAVMN SRAPAGGYAD RRVDGGGEEL 180 PKLDLTLKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799127.1 | 4e-37 | uncharacterized protein LOC112879022 | ||||
TrEMBL | A0A2T7F2U5 | 2e-38 | A0A2T7F2U5_9POAL; Uncharacterized protein | ||||
STRING | Si018405m | 3e-29 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |