PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc03905.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 348aa MW: 37677.3 Da PI: 6.4973

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03905.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	9.5e-14	15	64	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed lv+ +++ Gg+ +W+ +r g++R++k+c++rw +yl Zmw_sc03905.1.g00030.1.sm.mkhc 15 KGPWTEDEDRTLVEHIQRRGGHvsSWRNLPRAAGLNRCGKSCRLRWTNYL 64 79**********************************************97 PP
2	Myb_DNA-binding	52.9	8.5e-17	70	114	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +E+ l++ +++ lG++ W+tIa ++ gRt++++k++w+++ Zmw_sc03905.1.g00030.1.sm.mkhc 70 RGNFTDDEERLIIALHADLGNK-WSTIATHLE-GRTDNEIKNYWNTH 114 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.212	10	64	IPR017930	Myb domain
SuperFamily	SSF46689	4.49E-26	12	111	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-7	14	66	IPR001005	SANT/Myb domain
Pfam	PF00249	7.2E-12	15	64	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-19	16	71	IPR009057	Homeodomain-like
CDD	cd00167	1.70E-6	17	64	No hit	No description
PROSITE profile	PS51294	26.778	65	119	IPR017930	Myb domain
SMART	SM00717	2.3E-15	69	117	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-14	70	114	IPR001005	SANT/Myb domain
CDD	cd00167	7.15E-12	72	115	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.5E-26	72	120	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MGRSPCCCHD AGVKKGPWTE DEDRTLVEHI QRRGGHVSSW RNLPRAAGLN RCGKSCRLRW 60 TNYLRPDIRR GNFTDDEERL IIALHADLGN KWSTIATHLE GRTDNEIKNY WNTHIRKKLV 120 RAGVDPVTHR RLPPDVGILN GALASPGGPP AGTLLCAAAS SLRGQLNPAL MRQAQALQLL 180 LQVIGTCGSS NGSANALLGN CNLPTGNAMF TNNVNTSVAS DLQDQMVTIF SQANNQQSAG 240 YSYPPNSTAA ANFAEQGMVQ QYLKSSAPSP CCGSLNGVPA AADQYCDTTA TLERPAYPQE 300 VAAAGVDLPV PVPSFTDMLG LDDEMPNLYS LEEDGRFWDD MLHNSFSL

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MGRSPCCCHD AGVKKGPWTE DEDRTLVEHI QRRGGHVSSW RNLPRAAGLN RCGKSCRLRW  60
TNYLRPDIRR GNFTDDEERL IIALHADLGN KWSTIATHLE GRTDNEIKNY WNTHIRKKLV  120
RAGVDPVTHR RLPPDVGILN GALASPGGPP AGTLLCAAAS SLRGQLNPAL MRQAQALQLL  180
LQVIGTCGSS NGSANALLGN CNLPTGNAMF TNNVNTSVAS DLQDQMVTIF SQANNQQSAG  240
YSYPPNSTAA ANFAEQGMVQ QYLKSSAPSP CCGSLNGVPA AADQYCDTTA TLERPAYPQE  300
VAAAGVDLPV PVPSFTDMLG LDDEMPNLYS LEEDGRFWDD MLHNSFSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-26	15	119	7	108	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001105856.1	1e-112	transcription factor MYB2
TrEMBL	A0A1E5WJI7	1e-112	A0A1E5WJI7_9POAL; Transcription factor MYB39
STRING	GRMZM2G081557_P01	1e-111	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6265	29	55