PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03322.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 430aa MW: 46985.7 Da PI: 9.3033

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03322.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.6	4.4e-08	232	274	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + r RR+ri ++ +eL +l+P ++ls ae+L +A +Y+k Lq Zmw_sc03322.1.g00130.1.am.mk 232 AARERRRRISQKTAELSRLIPGG-----QRLSTAEMLHEAARYVKLLQ 274 56899999***********96.....7**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.462	224	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.28E-10	229	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.98E-7	230	277	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.8E-8	230	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-8	230	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-5	233	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MRFEPSRKAE EATRHWRFHE MRKSTQGAGT WQQRKNERKS LRCNAPLHGE DICRTVLRDS 60 DLSSPVKRAR SISASNHPAM ALSFHPTTAP GAADMTSFLH DAHPDVSDDG LLGFVYDVPL 120 NAVLDDFLDL PSLNAAAFTT GPVSDDAAAF LGPLENEFLT TECLEPAQHC DKNLRTACNY 180 QQEPAAMPEF AAEFVMAPLP PSLPLPQPRT FARGSADAKI YPRGNVGHQS VAARERRRRI 240 SQKTAELSRL IPGGQRLSTA EMLHEAARYV KLLQAQVGVL ALMRTVDSSE NEKTPAVMAT 300 REQMHALLVS SSVQERLAAE GKCLVPRKLV DAVAKDKAVK SKGRRPESVG LVKAAALLFR 360 ARTAVSLFYE NAVRPAAAVV RVSVCVSFIP DHAPDDVCLR SSRPVRARVS SAAAPDFLYK 420 PGLPPTRPCS

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MRFEPSRKAE EATRHWRFHE MRKSTQGAGT WQQRKNERKS LRCNAPLHGE DICRTVLRDS  60
DLSSPVKRAR SISASNHPAM ALSFHPTTAP GAADMTSFLH DAHPDVSDDG LLGFVYDVPL  120
NAVLDDFLDL PSLNAAAFTT GPVSDDAAAF LGPLENEFLT TECLEPAQHC DKNLRTACNY  180
QQEPAAMPEF AAEFVMAPLP PSLPLPQPRT FARGSADAKI YPRGNVGHQS VAARERRRRI  240
SQKTAELSRL IPGGQRLSTA EMLHEAARYV KLLQAQVGVL ALMRTVDSSE NEKTPAVMAT  300
REQMHALLVS SSVQERLAAE GKCLVPRKLV DAVAKDKAVK SKGRRPESVG LVKAAALLFR  360
ARTAVSLFYE NAVRPAAAVV RVSVCVSFIP DHAPDDVCLR SSRPVRARVS SAAAPDFLYK  420
PGLPPTRPCS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661333.1	7e-68	uncharacterized protein LOC101765829
TrEMBL	A0A3L6S6L1	9e-70	A0A3L6S6L1_PANMI; Uncharacterized protein
STRING	Pavir.Ia04589.1.p	3e-69	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6201	30	51