PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03234.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 389aa MW: 41144.2 Da PI: 9.5828

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03234.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.2	2.2e-06	289	315	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + Zmw_sc03234.1.g00050.1.sm.mkhc 289 SHSLAERVRREKISQRMKLLQDLVPGC 315 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-7	283	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.84E-5	283	326	No hit	No description
PROSITE profile	PS50888	9.28	285	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-7	288	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MNCGPPDQMP PATAPSCFLN LNWDQSMAAA GNGDRLDPAL SSMVSSPASN STAAAASDGL 60 ALHGISPQPQ YGGTPLSSPP KLNLSMMGQF HHYPRPLVGG AGAAGQPILE NFMPPMGRMD 120 QFLADPGFTE RAARLSSFDG RAGAYAGAVP GQFGLPDAGP VGALKELELG NGRDESSMSD 180 PASASADMTL KGPSDGNARK WKASGKGKGK DGPVSTSAKD LAKEESSGKR CKSGDESNGA 240 EENSSRGKAA QNSNENGGKK QGKDSTSKPT EPPKDYIHVR ARRGEATDSH SLAERVRREK 300 ISQRMKLLQD LVPGCNKFLS MKLATVNPQL DFNNLPNLLS KDAFNKTRGG AKGQTGGTNK 360 LRWEWICWKM LLGVHHQTKQ CDGIQAMLR

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MNCGPPDQMP PATAPSCFLN LNWDQSMAAA GNGDRLDPAL SSMVSSPASN STAAAASDGL  60
ALHGISPQPQ YGGTPLSSPP KLNLSMMGQF HHYPRPLVGG AGAAGQPILE NFMPPMGRMD  120
QFLADPGFTE RAARLSSFDG RAGAYAGAVP GQFGLPDAGP VGALKELELG NGRDESSMSD  180
PASASADMTL KGPSDGNARK WKASGKGKGK DGPVSTSAKD LAKEESSGKR CKSGDESNGA  240
EENSSRGKAA QNSNENGGKK QGKDSTSKPT EPPKDYIHVR ARRGEATDSH SLAERVRREK  300
ISQRMKLLQD LVPGCNKFLS MKLATVNPQL DFNNLPNLLS KDAFNKTRGG AKGQTGGTNK  360
LRWEWICWKM LLGVHHQTKQ CDGIQAMLR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971039.1	0.0	transcription factor bHLH77
TrEMBL	A0A0A9QTY7	0.0	A0A0A9QTY7_ARUDO; Uncharacterized protein
STRING	Si001242m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137