PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03086.1.g00110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 1044aa    MW: 112153 Da    PI: 9.6633
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03086.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.49e-17873927256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ +++keq   Lee F+++ +++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Zmw_sc03086.1.g00110.1.am.mk 873 RKKLRLSKEQSAFLEENFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 927
                                   788899***********************************************98 PP

2HD-ZIP_I/II1231.5e-39873963192
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk+rlskeq+++LEe+F+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+
  Zmw_sc03086.1.g00110.1.am.mk 873 RKKLRLSKEQSAFLEENFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQ 953
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelk 92 
                                   ke +eLr +lk
  Zmw_sc03086.1.g00110.1.am.mk 954 KELAELR-ALK 963
                                   ******9.555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-16863928IPR009057Homeodomain-like
SuperFamilySSF466891.63E-17864930IPR009057Homeodomain-like
PROSITE profilePS5007117.022869929IPR001356Homeobox domain
SMARTSM003897.1E-15871933IPR001356Homeobox domain
PfamPF000463.0E-14873927IPR001356Homeobox domain
CDDcd000866.08E-16873930No hitNo description
PROSITE patternPS000270904927IPR017970Homeobox, conserved site
CDDcd146860.00211920961No hitNo description
SMARTSM003401.5E-24929972IPR003106Leucine zipper, homeobox-associated
PfamPF021835.1E-10929963IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1044 aa     Download sequence    Send to blast
MLVLLPPPVH DAAGQSSSAP VPISPSDLQL QNCSQLYRVA TAAERFFHGE KKKAGTYYSG  60
SSDGGDERGR RFRFRSSGSG MLGPGMNDAR GSPDPLPFMG QGHEAEACGG QSRRNDCAWR  120
TVGPTSSRHA GWAHASSTPR AAHTEAGFPL VSSAWVPIPL SCPGRPPSVL VSSAKPPLVC  180
AVALGHGEIM GACMQSYPDI VCRRPSPRHQ ISTSRLSSGI CSGLYRVLRP NGFIPLGFYS  240
SYQASGTEEM DRGGWPTTGR DRPRSIRTPA RTQPGCLRQC TTPHHTRQRQ FQDSAGCYGE  300
GLPLLAAAAS WAWGHRAHSR PALSLHRAAP RRAVLWPPIG EPAVGRARVL PQRRVRVQSV  360
GARAPCPLTR HLCSPTASTR VELWARRVIA ASCLGRFLLS HVWCLVTLVD RQCELDRWCD  420
FNNFTGVGGG VGGAWARPPL CLNASSIHAC ITRSGHCDSA ISWRVTKAPE PAPQQRYASV  480
RPATYIVAGG RTGLKDTDWG GPMNLGAVAF TALRRPLHVM TSGSAAARAV TSCATAGRTY  540
TGLQCGSSEE LPRNGRGHGW HAVEDTGGLT QPEPYHPRCC HGAGACPHRI QDLLGRKLGR  600
VSCRAVCHHE ALLRRELEMQ GEEGHFPRRA SSPHCPFCLG HVRRVNRSNP PLSQAHTNTR  660
REERVQGRLA PSCHAAAIKS RRPCEFRRFQ YSTGRMELGL SLGATMADAG RDLVLGLGMG  720
MGVSRREDEG AERRGKSDRE EAAAAPARRE LEFGAGRCGR SSPEPPARLT FLSMEPTLGL  780
PWPSPDTGHL LASTRGFDVN RAPSCATGAA GEEDDERDDA GAGGAAVSSS SPNNSAGSFP  840
TDFSARGQAG TGGRGGDRAC SRASDEDDGG SSRKKLRLSK EQSAFLEENF KEHATLNPKQ  900
KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCETLTEENR RLQKELAELR  960
ALKTVNPFYM HLPATTLSMC PSCERVSSNS APAPGASAPA AALALSSGGI GDAAPEQRPS  1020
SFAALFSAPL HRPLAAQPQA PAGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1871877SRKKLRL
2921929RRARTKLKQ
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363