PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc03086.1.g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 1044aa MW: 112153 Da PI: 9.6633 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52.4 | 9e-17 | 873 | 927 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k Zmw_sc03086.1.g00110.1.am.mk 873 RKKLRLSKEQSAFLEENFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 927 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123 | 1.5e-39 | 873 | 963 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rlskeq+++LEe+F+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ Zmw_sc03086.1.g00110.1.am.mk 873 RKKLRLSKEQSAFLEENFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQ 953 69******************************************************************************* PP HD-ZIP_I/II 82 keveeLreelk 92 ke +eLr +lk Zmw_sc03086.1.g00110.1.am.mk 954 KELAELR-ALK 963 ******9.555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-16 | 863 | 928 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.63E-17 | 864 | 930 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.022 | 869 | 929 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.1E-15 | 871 | 933 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.0E-14 | 873 | 927 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.08E-16 | 873 | 930 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 904 | 927 | IPR017970 | Homeobox, conserved site |
CDD | cd14686 | 0.00211 | 920 | 961 | No hit | No description |
SMART | SM00340 | 1.5E-24 | 929 | 972 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.1E-10 | 929 | 963 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1044 aa Download sequence Send to blast |
MLVLLPPPVH DAAGQSSSAP VPISPSDLQL QNCSQLYRVA TAAERFFHGE KKKAGTYYSG 60 SSDGGDERGR RFRFRSSGSG MLGPGMNDAR GSPDPLPFMG QGHEAEACGG QSRRNDCAWR 120 TVGPTSSRHA GWAHASSTPR AAHTEAGFPL VSSAWVPIPL SCPGRPPSVL VSSAKPPLVC 180 AVALGHGEIM GACMQSYPDI VCRRPSPRHQ ISTSRLSSGI CSGLYRVLRP NGFIPLGFYS 240 SYQASGTEEM DRGGWPTTGR DRPRSIRTPA RTQPGCLRQC TTPHHTRQRQ FQDSAGCYGE 300 GLPLLAAAAS WAWGHRAHSR PALSLHRAAP RRAVLWPPIG EPAVGRARVL PQRRVRVQSV 360 GARAPCPLTR HLCSPTASTR VELWARRVIA ASCLGRFLLS HVWCLVTLVD RQCELDRWCD 420 FNNFTGVGGG VGGAWARPPL CLNASSIHAC ITRSGHCDSA ISWRVTKAPE PAPQQRYASV 480 RPATYIVAGG RTGLKDTDWG GPMNLGAVAF TALRRPLHVM TSGSAAARAV TSCATAGRTY 540 TGLQCGSSEE LPRNGRGHGW HAVEDTGGLT QPEPYHPRCC HGAGACPHRI QDLLGRKLGR 600 VSCRAVCHHE ALLRRELEMQ GEEGHFPRRA SSPHCPFCLG HVRRVNRSNP PLSQAHTNTR 660 REERVQGRLA PSCHAAAIKS RRPCEFRRFQ YSTGRMELGL SLGATMADAG RDLVLGLGMG 720 MGVSRREDEG AERRGKSDRE EAAAAPARRE LEFGAGRCGR SSPEPPARLT FLSMEPTLGL 780 PWPSPDTGHL LASTRGFDVN RAPSCATGAA GEEDDERDDA GAGGAAVSSS SPNNSAGSFP 840 TDFSARGQAG TGGRGGDRAC SRASDEDDGG SSRKKLRLSK EQSAFLEENF KEHATLNPKQ 900 KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCETLTEENR RLQKELAELR 960 ALKTVNPFYM HLPATTLSMC PSCERVSSNS APAPGASAPA AALALSSGGI GDAAPEQRPS 1020 SFAALFSAPL HRPLAAQPQA PAGS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 871 | 877 | SRKKLRL |
2 | 921 | 929 | RRARTKLKQ |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5209 | 33 | 63 |