PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03058.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 348aa    MW: 37648.8 Da    PI: 5.9609
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03058.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.61e-2272136359
                                   -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT.....EEEEEEES--SS- CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk.....vveitYegeHnhe 59 
                                   Dgy+WrKYGqK+++g+ +prsYYrCt +   gCp+k+ v+r+++  +     + +++Y  eH+++
  Zmw_sc03058.1.g00010.1.sm.mk  72 DGYQWRKYGQKQIEGAMYPRSYYRCTWSaeqGCPAKRTVQRNDDGDDiggspMYTVVYMAEHTCT 136
                                   9*************************988889**********95433333337899******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-2460136IPR003657WRKY domain
SuperFamilySSF1182901.57E-2166137IPR003657WRKY domain
SMARTSM007741.4E-2870137IPR003657WRKY domain
PfamPF031068.3E-2472135IPR003657WRKY domain
PROSITE profilePS5081118.69372113IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSTLGPELEL RELLLPNRSN GAWSCTTHPA TTRHGSKRVG NKDEELAPTC SKRRKKKHGI  60
SACLVTSVPD FDGYQWRKYG QKQIEGAMYP RSYYRCTWSA EQGCPAKRTV QRNDDGDDIG  120
GSPMYTVVYM AEHTCTFNDS MEAPVILETT AVQAAYKRPC SAKNIAAPAA FLPPEAEARH  180
DPAAVDSATA TESSVSGPAS TIVTKTGTAE SPATSDVTWS GTANNNEQHV VGDLPYDGLL  240
AVDDRWAEMS SPLVHQDMDD FTGPIRSPVH IAAGDWTTVD HLHLFNEPIS HFSAGIGKSA  300
RARWPSEEDG SASRDGAATA AAQCLRLEEG VTKPTELLRP GQSRFLNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-14721351068OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977390.12e-70probable WRKY transcription factor 58
TrEMBLA0A0A9HC424e-77A0A0A9HC42_ARUDO; Uncharacterized protein
STRINGSi010813m7e-70(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058