PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03003.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 354aa MW: 35989.7 Da PI: 8.0625

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03003.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.7e-39	60	121	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Zmw_sc03003.1.g00100.1.sm.mk 60 KEKALNCPRCSSTNTKFCYYNNYSLHQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 121 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-30	56	118	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-33	62	118	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.882	64	118	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	66	102	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MEDMLMAANA PAGNPSQGSN PNPSATAPAP SLTPGGALRG GAPAAVPGAG SAERRVRPQK 60 EKALNCPRCS STNTKFCYYN NYSLHQPRYF CKTCRRYWTE GGSLRNVPVG GGSRKNKRSS 120 SSSASTSASA SVTSSSMASS MEVASKNPKL THEGAQDLNL AFPSGLQAPG DFAAFPSLES 180 GNMCNPGGAM ISNGRGVGTG SAVCALSAME LLRSTGGYMP LQVPMQMPRD YAAAGFSFGE 240 FRAPPPPSQS VLGFSLDAHG SVAGTAAAGY GSGARLQGAP ENASRLLFPF EDLKTPVTSG 300 DGDGDAGASG DTGDGNNGHH QFEHGKEQTA GGPGAGHDTP GFWNGMIGGS GTSW

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MEDMLMAANA PAGNPSQGSN PNPSATAPAP SLTPGGALRG GAPAAVPGAG SAERRVRPQK  60
EKALNCPRCS STNTKFCYYN NYSLHQPRYF CKTCRRYWTE GGSLRNVPVG GGSRKNKRSS  120
SSSASTSASA SVTSSSMASS MEVASKNPKL THEGAQDLNL AFPSGLQAPG DFAAFPSLES  180
GNMCNPGGAM ISNGRGVGTG SAVCALSAME LLRSTGGYMP LQVPMQMPRD YAAAGFSFGE  240
FRAPPPPSQS VLGFSLDAHG SVAGTAAAGY GSGARLQGAP ENASRLLFPF EDLKTPVTSG  300
DGDGDAGASG DTGDGNNGHH QFEHGKEQTA GGPGAGHDTP GFWNGMIGGS GTSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976522.1	1e-129	dof zinc finger protein 1 isoform X1
Swissprot	Q9SXG8	1e-119	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A0A9GUS7	1e-152	A0A0A9GUS7_ARUDO; Uncharacterized protein
STRING	Si010443m	1e-128	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]