PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02952.1.g00160.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 284aa    MW: 30304.6 Da    PI: 7.2836
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02952.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.61.5e-13146185347
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 
                                   y+G+r ++ +g+Wv+eIr+p+    +  r++lg++ tae+Aa+a++
  Zmw_sc02952.1.g00160.1.am.mk 146 YRGIR-CR-SGKWVSEIREPR----KaSRIWLGTYPTAEMAAAAYD 185
                                   9***9.55.6*********94....36******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-12145187IPR016177DNA-binding domain
SMARTSM003803.3E-12145218IPR001471AP2/ERF domain
PROSITE profilePS5103214.579145186IPR001471AP2/ERF domain
PfamPF008471.4E-6146186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-18146186IPR001471AP2/ERF domain
CDDcd000181.58E-16146185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MHSPFSNHGC VRRATTTTFG IRKADSDGAN QLRDAKPHRK AYNYAIRKAD SDGAVSVVLP  60
GRHQLSTSIL PLRLRVCRLS SPPLSSSPVS SPPDTQAPPQ QGPGPRHPSS VVQAGDATTG  120
VSTAPTAAAT SSGEPSPRSS GKHAFYRGIR CRSGKWVSEI REPRKASRIW LGTYPTAEMA  180
AAAYDLEHPH GGESPDAAAP ALVAPEQRHG VTSSATADAS SCAPQQEFGN DEFMDEEAIF  240
EMPQLLRNMA AGMMMSPPRL SPYTSDESPD PSEAGESLWS YRDP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953436.12e-64ethylene-responsive transcription factor ERF027
RefseqXP_025826401.12e-64ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ901e-30ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A3B6NT602e-64A0A3B6NT60_WHEAT; Uncharacterized protein
TrEMBLA0A446VJE32e-64A0A446VJE3_TRITD; Uncharacterized protein
TrEMBLA0A446VJJ21e-64A0A446VJJ2_TRITD; Uncharacterized protein
STRINGSi018039m8e-64(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]