PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc02904.1.g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 226aa MW: 24748.3 Da PI: 8.6679 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 47.4 | 5e-15 | 1 | 32 | 47 | 78 |
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 srfh+lsefD++krsCrrrL++hn+rrrk+q+ Zmw_sc02904.1.g00110.1.es.mkhc 1 SRFHALSEFDQKKRSCRRRLSDHNARRRKPQP 32 8****************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 14.905 | 1 | 30 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.0E-8 | 1 | 29 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.61E-12 | 1 | 35 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.3E-4 | 1 | 17 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
SRFHALSEFD QKKRSCRRRL SDHNARRRKP QPDAFAFASA RLPSSLFDDR RQISFVWNKA 60 PLSHVRPFTS PWDGSSDFKF PHTKEIREIS TKVGTTTGSD HYNSHLSNAI PTLSHGKDAL 120 LPTKGPDTSI TASKFDGAPD LQRALSLLSA GSCGFPDPVQ QASCLIQFSG TSENSGDLHS 180 SHGGSSALVS CADEQHIAPQ SQLVRFTLDA GGNDYDSTFF GLNQRN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 11 | 28 | KKRSCRRRLSDHNARRRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951747.1 | 1e-137 | squamosa promoter-binding-like protein 4 | ||||
Refseq | XP_025805124.1 | 1e-137 | squamosa promoter-binding-like protein 4 | ||||
Swissprot | Q653Z5 | 2e-63 | SPL11_ORYSJ; Squamosa promoter-binding-like protein 11 | ||||
TrEMBL | A0A2T7F2J9 | 1e-136 | A0A2T7F2J9_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6QEF9 | 1e-136 | A0A3L6QEF9_PANMI; Squamosa promoter-binding-like protein 4 | ||||
STRING | Si017749m | 1e-136 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6271 | 29 | 52 |