PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02820.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 219aa MW: 24018.8 Da PI: 7.0047 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 7.2e-13 | 153 | 198 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + +e+L AveYIk+Lq Zmw_sc02820.1.g00090.1.am.mkhc 153 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSEMLDTAVEYIKELQ 198 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.348 | 147 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.5E-16 | 150 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.34E-13 | 151 | 202 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.8E-17 | 152 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-12 | 153 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-10 | 153 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MSATTGMGSY PHGGTDTMAH GHNRRLSSQW SFSRQDLPQI SEMGMIPDIG ESIIAGGCNS 60 SSDGGAQSSY LSRNFSVGSW DDTNSIMFSS PGKKVKVDAA DDMVTSFSNI DSQFGLSKSS 120 LDMSGMDDYL QLQQDSIACR VRAKRGCATH PRSIAERERR TRISKRLKKL QDLVPNMDKQ 180 TNTSEMLDTA VEYIKELQSQ VEKLKHDQAN CSCAGNQNC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814593.1 | 1e-134 | transcription factor bHLH128-like | ||||
TrEMBL | A0A0A9DES0 | 1e-141 | A0A0A9DES0_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J01306.1.p | 1e-131 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7071 | 37 | 52 |