PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02732.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 479aa    MW: 52244.4 Da    PI: 10.589
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02732.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.66.7e-31309365158
                     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                   d+p+YVNaKQy++Il+RR +Rak+e+e++l  k+rkpylheSRh hA+rR+RgsgGrF
  Zmw_sc02732.1.g00030.1.am.mk 309 DAPIYVNAKQYEGILRRRRARAKAERENRL-VKGRKPYLHESRHLHAMRRARGSGGRF 365
                                   68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-34307368IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.3308368IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-27311365IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.6E-23311333IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860313333IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.6E-23342365IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MPERLECRFI SWHMYDFSLI EVRGSGRSTF QTRWRHGKGR WPCIVSSSHR SIDVAFVAGK  60
RSVGGGDSWQ LGVLLLRGSR GTNRFGKRKR LALALAPSIS GESYPDVSGL SASPHLLACA  120
SIVLARALQL LQSIGLLGLP LLFVRILMRS PPSQAEAARL EFPFKARQGK SAMMSFKSHE  180
GFATLNQAAN GGGAPLPWWA GPQLLYGEPA PLSPEETRRD GQFQVVPGAQ GSPDPAPPSA  240
KRAAQPEVLK FSVFQGNSEA GGKGDKAPDH STTIALQSPF SEYNGRFEIG LGQSMSGGRM  300
LLPLNAPADA PIYVNAKQYE GILRRRRARA KAERENRLVK GRKPYLHESR HLHAMRRARG  360
SGGRFLNTKK EGNSKEMSTN GGNKLAPLAQ PCPYSPRLEH GNNQRNCHSR SSASSGLSGS  420
EVSRMYEHDD TDHYNSSIEH LRTPFFTPLP SIMDGEHGVA AIPSFKWAAG DGCFELLKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-17309367261HAPB protein
4g92_A1e-17309367261HAPB protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677584.11e-123nuclear transcription factor Y subunit A-10 isoform X2
RefseqXP_020407730.11e-123nuclear transcription factor Y subunit A-10 isoform X2
TrEMBLA0A0A9RWX31e-145A0A0A9RWX3_ARUDO; Uncharacterized protein
STRINGPavir.Ia01146.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790