PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02727.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 360aa MW: 40452.2 Da PI: 4.6903

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02727.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.6	2.2e-34	43	133	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 Fl+k+++++ed++++ ++sws+ gnsfvv+d++ fa+ +Lp+ Fkhsnf+SFvRQLn+YgF+kv+ ++ we Zmw_sc02727.1.g00020.1.sm.mkhc 43 FLTKTFDLVEDPSTDAVVSWSRAGNSFVVWDPHVFADALLPRLFKHSNFSSFVRQLNTYGFRKVDPDK---------WE 112 9**************************************************************999......... PP EEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 81 FkhksFkkgkkellekikrkk 101 F+++ F +g+++ll++ikr+k Zmw_sc02727.1.g00020.1.sm.mkhc 113 FANEGFLRGQRHLLKTIKRRK 133 *******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.3E-60	39	132	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	5.5E-38	39	132	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.09E-34	39	132	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.3E-31	43	132	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-19	43	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-19	81	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	82	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-19	94	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MGSSAPGIVK EELLEHEDGG GGGGGGDAPR PMEGLHEVGP PPFLTKTFDL VEDPSTDAVV 60 SWSRAGNSFV VWDPHVFADA LLPRLFKHSN FSSFVRQLNT YGFRKVDPDK WEFANEGFLR 120 GQRHLLKTIK RRKPLSTAPA SRQQAPAPAS CLEVGEFGFE EEIDRLKRDK NILISEVVKL 180 RQEQQTTREH VHAMEERLRT AEQKQVQMMG FLARAMRNPE FFQQLVQQQD KRKELEDAIS 240 KKRRRPIDYA PFYNPGESSQ SEQLDSQFLF DSGVLDGLTE PGMPELENLA ANIQELGKGN 300 ADDVKMDQGS GQPELNDDFW EELLVEDYGD KAGHPELEAR TEVVDEIAQQ LGYLSSTSPK

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MGSSAPGIVK EELLEHEDGG GGGGGGDAPR PMEGLHEVGP PPFLTKTFDL VEDPSTDAVV  60
SWSRAGNSFV VWDPHVFADA LLPRLFKHSN FSSFVRQLNT YGFRKVDPDK WEFANEGFLR  120
GQRHLLKTIK RRKPLSTAPA SRQQAPAPAS CLEVGEFGFE EEIDRLKRDK NILISEVVKL  180
RQEQQTTREH VHAMEERLRT AEQKQVQMMG FLARAMRNPE FFQQLVQQQD KRKELEDAIS  240
KKRRRPIDYA PFYNPGESSQ SEQLDSQFLF DSGVLDGLTE PGMPELENLA ANIQELGKGN  300
ADDVKMDQGS GQPELNDDFW EELLVEDYGD KAGHPELEAR TEVVDEIAQQ LGYLSSTSPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-26	24	132	10	129	Heat shock factor protein 1
5d5v_B	2e-26	24	132	10	129	Heat shock factor protein 1
5d5v_D	2e-26	24	132	10	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	131	LKTIKRR
2	230	244	KRKELEDAISKKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:16202242}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022679240.1	0.0	heat stress transcription factor A-2c isoform X2
Swissprot	Q338B0	0.0	HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBL	K4ABP7	0.0	K4ABP7_SETIT; Uncharacterized protein
STRING	Si036304m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Singh A, et al. OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.). Cell Stress Chaperones, 2012. 17(2): p. 243-54 [PMID:22147560]