PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02555.1.g00130.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 458aa    MW: 48654.4 Da    PI: 8.3603
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02555.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-16100149255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a++ ++g
  Zmw_sc02555.1.g00130.1.am.mk 100 RYRGVRRRP-WGRFAAEIRDPM----SkERRWLGTFDTAEQAACAYDIAARVMRG 149
                                   69*******.**********84....35999********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.88E-2799159No hitNo description
SuperFamilySSF541711.9E-21100158IPR016177DNA-binding domain
PfamPF008472.2E-9100149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-30100158IPR001471AP2/ERF domain
SMARTSM003801.5E-34100163IPR001471AP2/ERF domain
PROSITE profilePS5103222.787100157IPR001471AP2/ERF domain
PRINTSPR003676.1E-9101112IPR001471AP2/ERF domain
PRINTSPR003676.1E-9123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MSRRPGSSLS SLSISSAPTP RRSPNIQSFA KSCNTGHRPS RDIHLDRPVS LRNDPHPVMD  60
DTAADAHLYG HTHAHNHRSR RSSHAGAVDE DGDVSPKMAR YRGVRRRPWG RFAAEIRDPM  120
SKERRWLGTF DTAEQAACAY DIAARVMRGN KARTNFPVQA TAGCWPWGPS RVAAPDHMLS  180
PFILHNLLMS SSHPGGCRLL QHAAQGHANV ASATNRPPPV PPPRPCSTVS SPSGTVTTPA  240
GAVTSSVASP LGAQLDDDDD DDVWGSLLQG DPPGAGLLQD ALHDFYPSTR PRGTSRKPGA  300
DAIVRARTKQ DWNEAFRTAS TYGGDDVDED GDYPLMPQGL LGDMIQVPSF VDFHGRAVSS  360
LVPRPTDLMD PARTLQPSHA TLLDPATGVH HILLHAGVDS AAAGCTGVNF LSPGNAARTT  420
KLVLGAKEPS SRIPPVPANC SPCVHGPRAL GCGSGTAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-19101163669ATERF1
3gcc_A7e-19101163669ATERF1
5wx9_A1e-1894163878Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955046.12e-87ethylene-responsive transcription factor 3
TrEMBLK3YYH54e-86K3YYH5_SETIT; Uncharacterized protein
STRINGSi019328m7e-87(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050