PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02512.1.g00110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 344aa    MW: 38372.3 Da    PI: 7.1328
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02512.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.43.3e-2255126172
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                                   +W++ e+ a +++r ++++++ ++k++k+lWe+vs++++++gf r+p qCk+kw+nl +r+k +++ + + +
  Zmw_sc02512.1.g00110.1.am.mk  55 QWSHAETAAFLAIRADLDHSFLTTKRNKALWEAVSARLAAQGFARTPDQCKSKWKNLVTRFKGTEAAAASAA 126
                                   7***************************************************************99888764 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122039.91E-2354119No hitNo description
PfamPF138373.1E-1755148No hitNo description
PROSITE profilePS500907.51556112IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDPFHHLNTS FSNPYHPLLS PSPPHHFPPL PPLAAEPPPQ PLPSSSSLER ERLPQWSHAE  60
TAAFLAIRAD LDHSFLTTKR NKALWEAVSA RLAAQGFART PDQCKSKWKN LVTRFKGTEA  120
AAASAAQPAE HDPGATAARQ FPFHDEMRRI FDARAERARA LESKKAKGKD VRPEDNEGGG  180
GGEGDDEDYE EIEAAEMLVE EEAGRAAAED RDAAGVARKR RRKQAARTPS ADQGEVEAML  240
REFMRRQLEM EERWMEAAEA REAERRQREE EWRTAMVXXX XXXXXXARAR RSARSDGTSS  300
SQHCSPSSAA TPRDTSPLQS IHPRRYGPTP RTNPASELAP SPRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217221RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805344.12e-88LOW QUALITY PROTEIN: trihelix transcription factor GT-3b-like
TrEMBLA0A0E0H8W81e-84A0A0E0H8W8_ORYNI; Uncharacterized protein
STRINGONIVA05G01910.12e-85(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134