PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02512.1.g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 344aa MW: 38372.3 Da PI: 7.1328 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 70.4 | 3.3e-22 | 55 | 126 | 1 | 72 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 +W++ e+ a +++r ++++++ ++k++k+lWe+vs++++++gf r+p qCk+kw+nl +r+k +++ + + + Zmw_sc02512.1.g00110.1.am.mk 55 QWSHAETAAFLAIRADLDHSFLTTKRNKALWEAVSARLAAQGFARTPDQCKSKWKNLVTRFKGTEAAAASAA 126 7***************************************************************99888764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 9.91E-23 | 54 | 119 | No hit | No description |
Pfam | PF13837 | 3.1E-17 | 55 | 148 | No hit | No description |
PROSITE profile | PS50090 | 7.515 | 56 | 112 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MDPFHHLNTS FSNPYHPLLS PSPPHHFPPL PPLAAEPPPQ PLPSSSSLER ERLPQWSHAE 60 TAAFLAIRAD LDHSFLTTKR NKALWEAVSA RLAAQGFART PDQCKSKWKN LVTRFKGTEA 120 AAASAAQPAE HDPGATAARQ FPFHDEMRRI FDARAERARA LESKKAKGKD VRPEDNEGGG 180 GGEGDDEDYE EIEAAEMLVE EEAGRAAAED RDAAGVARKR RRKQAARTPS ADQGEVEAML 240 REFMRRQLEM EERWMEAAEA REAERRQREE EWRTAMVXXX XXXXXXARAR RSARSDGTSS 300 SQHCSPSSAA TPRDTSPLQS IHPRRYGPTP RTNPASELAP SPRI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 217 | 221 | RKRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805344.1 | 2e-88 | LOW QUALITY PROTEIN: trihelix transcription factor GT-3b-like | ||||
TrEMBL | A0A0E0H8W8 | 1e-84 | A0A0E0H8W8_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G01910.1 | 2e-85 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12595 | 31 | 34 |