PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02487.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TALE

Protein Properties

Length: 408aa MW: 45191.2 Da PI: 7.7429

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02487.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27	7.5e-09	292	329	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++ LA+++gL+ +qV++WF N R + Zmw_sc02487.1.g00120.1.am.mkhc 292 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 329 554459******************************88 PP
2	BELL	95.3	5.3e-31	155	223	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 el+++ka+Lls++ eVd+rY++y+eq+++v sFeavag g+a++Yt+l +a+SrhFrcL+da+a q+ Zmw_sc02487.1.g00120.1.am.mkhc 155 ELERRKARLLSIVAEVDRRYRRYREQMRAVELSFEAVAGAGAAQVYTRLVRQAMSRHFRCLRDAVAAQV 223 799***************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	5.3E-50	86	221	IPR006563	POX domain
Pfam	PF07526	5.0E-37	92	220	IPR006563	POX domain
PROSITE profile	PS50071	11.645	270	333	IPR001356	Homeobox domain
SMART	SM00389	6.0E-9	273	337	IPR001356	Homeobox domain
CDD	cd00086	1.58E-11	273	334	No hit	No description
SuperFamily	SSF46689	4.06E-17	274	340	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-27	276	339	IPR009057	Homeodomain-like
Pfam	PF05920	1.8E-17	290	329	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MAVHQPHLLD FSAPPNPTPM EAPPPAFDNA DGLLALPHVD GAEETPWPQA AVSLSLFNYH 60 QQPVTAAVVS VAPPTQLHVP AAPASMQTFF HLRSSRYLGP VQELLGEFCS LGGGDFHAMV 120 EKQRAPAGKW VDDVEALSSG LWGNPSQSST MLLLELERRK ARLLSIVAEV DRRYRRYREQ 180 MRAVELSFEA VAGAGAAQVY TRLVRQAMSR HFRCLRDAVA AQVRSLRKAM GDRDASAPAG 240 ATKGDTPRLR VLDQCLRQQR AFQQPAAVEN YPWRPQRGLP QRAVAVLRAW LFEHFLHPYP 300 NDVDKHILAR QTGLSRSQVS NWFINARVRL WKPMIEDMYT EEVNQQNPSD TAAIVKAESS 360 TTTILGEGEI SHQNQQLCSV GNPNNYMISS GGDHMNLMGS QSLHDLAG

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MAVHQPHLLD FSAPPNPTPM EAPPPAFDNA DGLLALPHVD GAEETPWPQA AVSLSLFNYH  60
QQPVTAAVVS VAPPTQLHVP AAPASMQTFF HLRSSRYLGP VQELLGEFCS LGGGDFHAMV  120
EKQRAPAGKW VDDVEALSSG LWGNPSQSST MLLLELERRK ARLLSIVAEV DRRYRRYREQ  180
MRAVELSFEA VAGAGAAQVY TRLVRQAMSR HFRCLRDAVA AQVRSLRKAM GDRDASAPAG  240
ATKGDTPRLR VLDQCLRQQR AFQQPAAVEN YPWRPQRGLP QRAVAVLRAW LFEHFLHPYP  300
NDVDKHILAR QTGLSRSQVS NWFINARVRL WKPMIEDMYT EEVNQQNPSD TAAIVKAESS  360
TTTILGEGEI SHQNQQLCSV GNPNNYMISS GGDHMNLMGS QSLHDLAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-15	279	336	5	62	Homeobox protein Meis2
3k2a_B	4e-15	279	336	5	62	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964302.1	1e-176	homeobox protein BEL1 homolog
Refseq	XP_004964303.1	1e-176	homeobox protein BEL1 homolog
Swissprot	Q38897	2e-90	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	K3XWJ5	1e-175	K3XWJ5_SETIT; Uncharacterized protein
STRING	Si006303m	1e-175	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6398	35	47

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]